miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5927 3' -62.7 NC_001806.1 + 150867 0.8 0.091435
Target:  5'- cGGGCCGgcuccGCGGGCCAGGGcccgGGCa -3'
miRNA:   3'- aCCCGGCagca-CGCCCGGUCCUa---CCG- -5'
5927 3' -62.7 NC_001806.1 + 30636 0.79 0.098644
Target:  5'- aGGGCCGggGggGCGcGGCCAGGGUGGg -3'
miRNA:   3'- aCCCGGCagCa-CGC-CCGGUCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 32944 0.78 0.114697
Target:  5'- cGGGCCGUUGUGgggcccCGGGCCGGGGccccuUGGg -3'
miRNA:   3'- aCCCGGCAGCAC------GCCCGGUCCU-----ACCg -5'
5927 3' -62.7 NC_001806.1 + 33953 0.78 0.11585
Target:  5'- gGGGuuGuuauuguugucgggaUCGUGCGGGCCGGGGgucgccggGGCa -3'
miRNA:   3'- aCCCggC---------------AGCACGCCCGGUCCUa-------CCG- -5'
5927 3' -62.7 NC_001806.1 + 2029 0.78 0.12057
Target:  5'- cGGGcCCGUCG-GCGGGCCAGucgcaGGCg -3'
miRNA:   3'- aCCC-GGCAGCaCGCCCGGUCcua--CCG- -5'
5927 3' -62.7 NC_001806.1 + 151289 0.77 0.143393
Target:  5'- gGGGCCGgggggcggCGgcgGUGGGCCGGGccucUGGCg -3'
miRNA:   3'- aCCCGGCa-------GCa--CGCCCGGUCCu---ACCG- -5'
5927 3' -62.7 NC_001806.1 + 147686 0.76 0.162046
Target:  5'- gGGGCCGgggcgCGgggGCGGGCCccGGA-GGCg -3'
miRNA:   3'- aCCCGGCa----GCa--CGCCCGGu-CCUaCCG- -5'
5927 3' -62.7 NC_001806.1 + 111497 0.75 0.178943
Target:  5'- cGGGcCCGUCGUGUcuuucgguggaccuuGGGCCGucgggcacguacacGGGUGGCc -3'
miRNA:   3'- aCCC-GGCAGCACG---------------CCCGGU--------------CCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 14416 0.75 0.191822
Target:  5'- gGGGuCCGUUGUGuuGGCCGcagguccccgauGGGUGGCg -3'
miRNA:   3'- aCCC-GGCAGCACgcCCGGU------------CCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 116999 0.75 0.196448
Target:  5'- cGcGGCCGUUGUGCGGuCCGGaGAcaUGGCc -3'
miRNA:   3'- aC-CCGGCAGCACGCCcGGUC-CU--ACCG- -5'
5927 3' -62.7 NC_001806.1 + 73118 0.75 0.201172
Target:  5'- cGGGCCGcCGgucgccgagGCGGGCgAGGAcgacgGGCc -3'
miRNA:   3'- aCCCGGCaGCa--------CGCCCGgUCCUa----CCG- -5'
5927 3' -62.7 NC_001806.1 + 34417 0.74 0.205994
Target:  5'- cGGGCCGggcCGgGcCGGGCCGGGugGGCg -3'
miRNA:   3'- aCCCGGCa--GCaC-GCCCGGUCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 99641 0.74 0.221062
Target:  5'- gGGGCgGUg--GCGGGCCuGGcgGGCa -3'
miRNA:   3'- aCCCGgCAgcaCGCCCGGuCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 49958 0.74 0.221062
Target:  5'- cGGauGCCGUCGUGCGgcuGGCCAucaacGGGUGGg -3'
miRNA:   3'- aCC--CGGCAGCACGC---CCGGU-----CCUACCg -5'
5927 3' -62.7 NC_001806.1 + 95405 0.74 0.230012
Target:  5'- cGGGggcgaggacgaagaCCGUCGccGCGGGCCcGGggGGCa -3'
miRNA:   3'- aCCC--------------GGCAGCa-CGCCCGGuCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 127755 0.73 0.242605
Target:  5'- cGGGCUGcCGggUGCGGGCCu--GUGGCg -3'
miRNA:   3'- aCCCGGCaGC--ACGCCCGGuccUACCG- -5'
5927 3' -62.7 NC_001806.1 + 37788 0.73 0.248257
Target:  5'- gGGGCCGgggcgCGgggguccGCGGGCgGGGG-GGCa -3'
miRNA:   3'- aCCCGGCa----GCa------CGCCCGgUCCUaCCG- -5'
5927 3' -62.7 NC_001806.1 + 86038 0.73 0.265866
Target:  5'- aGGGCCG-CGggggggGCGGGCUcguccccuGGGgcGGCg -3'
miRNA:   3'- aCCCGGCaGCa-----CGCCCGG--------UCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 29678 0.73 0.271957
Target:  5'- cGGGCgGgCGaggaaaggGCGGGCCGGGGagggGGCg -3'
miRNA:   3'- aCCCGgCaGCa-------CGCCCGGUCCUa---CCG- -5'
5927 3' -62.7 NC_001806.1 + 51105 0.73 0.271957
Target:  5'- gGGGCCGcCGcccUGCGGGCgcacguguCGGGGaGGCg -3'
miRNA:   3'- aCCCGGCaGC---ACGCCCG--------GUCCUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.