miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5927 3' -62.7 NC_001806.1 + 1497 0.68 0.487483
Target:  5'- gGGGgCGUCGUcGuCGGGCuccagCAGGGcgcgGGCg -3'
miRNA:   3'- aCCCgGCAGCA-C-GCCCG-----GUCCUa---CCG- -5'
5927 3' -62.7 NC_001806.1 + 2029 0.78 0.12057
Target:  5'- cGGGcCCGUCG-GCGGGCCAGucgcaGGCg -3'
miRNA:   3'- aCCC-GGCAGCaCGCCCGGUCcua--CCG- -5'
5927 3' -62.7 NC_001806.1 + 2675 0.67 0.543462
Target:  5'- gGGcGCCGcCGUGUggcuGGGCCccGggGGCu -3'
miRNA:   3'- aCC-CGGCaGCACG----CCCGGucCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 2732 0.71 0.334726
Target:  5'- gGGGCCcUCG-GCGGGCCGgcgcgacacggccacGGGgcgcgGGCg -3'
miRNA:   3'- aCCCGGcAGCaCGCCCGGU---------------CCUa----CCG- -5'
5927 3' -62.7 NC_001806.1 + 2806 0.71 0.317745
Target:  5'- cGGGCUGggCGgggGCGGGCuCGGGccccgggGGCg -3'
miRNA:   3'- aCCCGGCa-GCa--CGCCCG-GUCCua-----CCG- -5'
5927 3' -62.7 NC_001806.1 + 2927 0.68 0.469425
Target:  5'- cGGGCCGcCGccuccgggcgGcCGGGCCGGGccGGg -3'
miRNA:   3'- aCCCGGCaGCa---------C-GCCCGGUCCuaCCg -5'
5927 3' -62.7 NC_001806.1 + 3291 0.66 0.591643
Target:  5'- gGGGCgCGUCGgcgugcgGCGgcGGCgGGGAagcggGGCc -3'
miRNA:   3'- aCCCG-GCAGCa------CGC--CCGgUCCUa----CCG- -5'
5927 3' -62.7 NC_001806.1 + 3343 0.7 0.40089
Target:  5'- -cGGCCG-CGgggggcugGCGGGCCGGGccccGGCc -3'
miRNA:   3'- acCCGGCaGCa-------CGCCCGGUCCua--CCG- -5'
5927 3' -62.7 NC_001806.1 + 3489 0.69 0.460524
Target:  5'- cGGcGUCGUCGUcgGCGucGGCguGGcgGGCg -3'
miRNA:   3'- aCC-CGGCAGCA--CGC--CCGguCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 3526 0.71 0.324741
Target:  5'- gGGGUCGUCGccccccGCGGGggAGGcgGGCg -3'
miRNA:   3'- aCCCGGCAGCa-----CGCCCggUCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 4822 0.67 0.543462
Target:  5'- gGGGuCCGgggCG-GCGaGGCCGcGGGgucgGGCg -3'
miRNA:   3'- aCCC-GGCa--GCaCGC-CCGGU-CCUa---CCG- -5'
5927 3' -62.7 NC_001806.1 + 5058 0.68 0.515165
Target:  5'- aGGGCCccccgcucGUCGcgGUcuGGGCuCGGGGUGGg -3'
miRNA:   3'- aCCCGG--------CAGCa-CG--CCCG-GUCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 5099 0.67 0.533968
Target:  5'- cGGcCCGUCgGUG-GGGCCcgGGGAgccggGGCg -3'
miRNA:   3'- aCCcGGCAG-CACgCCCGG--UCCUa----CCG- -5'
5927 3' -62.7 NC_001806.1 + 6067 0.67 0.533968
Target:  5'- cGcGCCGgcccCGgggGCGGGCCcGGgcGGCg -3'
miRNA:   3'- aCcCGGCa---GCa--CGCCCGGuCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 9324 0.67 0.562607
Target:  5'- cGGcGaCCGaCGUG-GGGCCucGGGAUGGg -3'
miRNA:   3'- aCC-C-GGCaGCACgCCCGG--UCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 9788 0.7 0.376881
Target:  5'- gGGGCCccgaCGUGCGGGU--GGGUGGg -3'
miRNA:   3'- aCCCGGca--GCACGCCCGguCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 10375 0.66 0.630704
Target:  5'- cUGGGCCaagaccUCGgGgGGGCgGGGGgaGGCg -3'
miRNA:   3'- -ACCCGGc-----AGCaCgCCCGgUCCUa-CCG- -5'
5927 3' -62.7 NC_001806.1 + 11319 0.69 0.460524
Target:  5'- gUGGG-UGUCGUG-GGGuCCAcGGggGGCg -3'
miRNA:   3'- -ACCCgGCAGCACgCCC-GGU-CCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 11755 0.66 0.620921
Target:  5'- aGGGCgugGUCGaUGCuuggGGaGCgGGGAUGGUg -3'
miRNA:   3'- aCCCGg--CAGC-ACG----CC-CGgUCCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 14416 0.75 0.191822
Target:  5'- gGGGuCCGUUGUGuuGGCCGcagguccccgauGGGUGGCg -3'
miRNA:   3'- aCCC-GGCAGCACgcCCGGU------------CCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.