Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5933 | 5' | -58.5 | NC_001806.1 | + | 26981 | 0.73 | 0.400739 |
Target: 5'- gCUCGUGGgccCGCGAgcggGCCgACCGGGCUc -3' miRNA: 3'- aGAGCGCU---GCGUUa---CGG-UGGCCCGAc -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 10110 | 0.73 | 0.400739 |
Target: 5'- aCUCGCGGCGCAcgGCgCgucgGCCGGGg-- -3' miRNA: 3'- aGAGCGCUGCGUuaCG-G----UGGCCCgac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 83753 | 0.73 | 0.400739 |
Target: 5'- aCUCGUuccuGGCGCAGucUGCCACCcGGGCc- -3' miRNA: 3'- aGAGCG----CUGCGUU--ACGGUGG-CCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 23712 | 0.71 | 0.49012 |
Target: 5'- -aUCGCcGCGCGGUG-CGCCGGGCc- -3' miRNA: 3'- agAGCGcUGCGUUACgGUGGCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 23458 | 0.71 | 0.499578 |
Target: 5'- --cCGCGGCGCcccggGCCGCCGcGGCg- -3' miRNA: 3'- agaGCGCUGCGuua--CGGUGGC-CCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 94723 | 0.71 | 0.528413 |
Target: 5'- --cUGCGGCGguAccugccccacGCCGCCGGGCUGu -3' miRNA: 3'- agaGCGCUGCguUa---------CGGUGGCCCGAC- -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 74871 | 0.7 | 0.546992 |
Target: 5'- cCUgGCGACccuGCGGgccucccUGCCGgCGGGCUGg -3' miRNA: 3'- aGAgCGCUG---CGUU-------ACGGUgGCCCGAC- -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 21784 | 0.7 | 0.547976 |
Target: 5'- gUCgagCGCGGCGCcggcaGCCcCCGGGCg- -3' miRNA: 3'- -AGa--GCGCUGCGuua--CGGuGGCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 50692 | 0.7 | 0.557843 |
Target: 5'- --aCGCG-CGCcauucugGCCGCCGGGCUc -3' miRNA: 3'- agaGCGCuGCGuua----CGGUGGCCCGAc -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 23890 | 0.7 | 0.56776 |
Target: 5'- aCgugCGCGugGUggUGCUguacucgccgcuGCCGGGCg- -3' miRNA: 3'- aGa--GCGCugCGuuACGG------------UGGCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 134805 | 0.7 | 0.577721 |
Target: 5'- --aCGCG-CGCGAUGCUgguggcgguaaACCGcGGCUGg -3' miRNA: 3'- agaGCGCuGCGUUACGG-----------UGGC-CCGAC- -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 2737 | 0.7 | 0.58772 |
Target: 5'- cCUCGgcgggcCGGCGCGAcacgGCCACgGGGCg- -3' miRNA: 3'- aGAGC------GCUGCGUUa---CGGUGgCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 22643 | 0.7 | 0.58772 |
Target: 5'- ---aGCG-CGCGGUGcCCGCCGGGUa- -3' miRNA: 3'- agagCGCuGCGUUAC-GGUGGCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 22443 | 0.69 | 0.607804 |
Target: 5'- cCUgGCGcACGCGGcgGCCGCCGuGGCc- -3' miRNA: 3'- aGAgCGC-UGCGUUa-CGGUGGC-CCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 21891 | 0.69 | 0.627959 |
Target: 5'- cCUcCGCGGgcCGCAucgagcGCCGCCGGGCc- -3' miRNA: 3'- aGA-GCGCU--GCGUua----CGGUGGCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 4652 | 0.69 | 0.627959 |
Target: 5'- gUCUcCGCGGCgGCuggGCCGgCGGGCg- -3' miRNA: 3'- -AGA-GCGCUG-CGuuaCGGUgGCCCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 36202 | 0.69 | 0.637036 |
Target: 5'- gCUCuGCcGCGCGggcggccAUGCCGCUGGaGCUGa -3' miRNA: 3'- aGAG-CGcUGCGU-------UACGGUGGCC-CGAC- -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 107013 | 0.69 | 0.644095 |
Target: 5'- aCUCGCGcGCGCuugccggguugGCCGCCcgcggggccgcGGGCUGu -3' miRNA: 3'- aGAGCGC-UGCGuua--------CGGUGG-----------CCCGAC- -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 1810 | 0.69 | 0.648126 |
Target: 5'- --aCGCGguaGCGCAcguUGCCGCCGcGGCa- -3' miRNA: 3'- agaGCGC---UGCGUu--ACGGUGGC-CCGac -5' |
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5933 | 5' | -58.5 | NC_001806.1 | + | 21940 | 0.69 | 0.657189 |
Target: 5'- --cCGCGACGCcacggGCCcuucacgGCCGGGCa- -3' miRNA: 3'- agaGCGCUGCGuua--CGG-------UGGCCCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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