miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5933 5' -58.5 NC_001806.1 + 1542 0.67 0.727643
Target:  5'- cCUcCGCGGCcCGc-GCCACCGGGCc- -3'
miRNA:   3'- aGA-GCGCUGcGUuaCGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 1810 0.69 0.648126
Target:  5'- --aCGCGguaGCGCAcguUGCCGCCGcGGCa- -3'
miRNA:   3'- agaGCGC---UGCGUu--ACGGUGGC-CCGac -5'
5933 5' -58.5 NC_001806.1 + 1936 0.66 0.819299
Target:  5'- --gUGCGGCGCAGgucccgcGCCGCCGGccaGCg- -3'
miRNA:   3'- agaGCGCUGCGUUa------CGGUGGCC---CGac -5'
5933 5' -58.5 NC_001806.1 + 2737 0.7 0.58772
Target:  5'- cCUCGgcgggcCGGCGCGAcacgGCCACgGGGCg- -3'
miRNA:   3'- aGAGC------GCUGCGUUa---CGGUGgCCCGac -5'
5933 5' -58.5 NC_001806.1 + 4058 0.67 0.737313
Target:  5'- gCUCG-GGCGCccacAcgGCCGCCgGGGCg- -3'
miRNA:   3'- aGAGCgCUGCG----UuaCGGUGG-CCCGac -5'
5933 5' -58.5 NC_001806.1 + 4652 0.69 0.627959
Target:  5'- gUCUcCGCGGCgGCuggGCCGgCGGGCg- -3'
miRNA:   3'- -AGA-GCGCUG-CGuuaCGGUgGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 4934 0.67 0.775019
Target:  5'- cCUCGcCGGCGuCGGUGCCcGCCgcggGGGCc- -3'
miRNA:   3'- aGAGC-GCUGC-GUUACGG-UGG----CCCGac -5'
5933 5' -58.5 NC_001806.1 + 10110 0.73 0.400739
Target:  5'- aCUCGCGGCGCAcgGCgCgucgGCCGGGg-- -3'
miRNA:   3'- aGAGCGCUGCGUuaCG-G----UGGCCCgac -5'
5933 5' -58.5 NC_001806.1 + 21754 0.66 0.802026
Target:  5'- --aCGCGAgGCGcggGCCGUCGGGCg- -3'
miRNA:   3'- agaGCGCUgCGUua-CGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 21784 0.7 0.547976
Target:  5'- gUCgagCGCGGCGCcggcaGCCcCCGGGCg- -3'
miRNA:   3'- -AGa--GCGCUGCGuua--CGGuGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 21891 0.69 0.627959
Target:  5'- cCUcCGCGGgcCGCAucgagcGCCGCCGGGCc- -3'
miRNA:   3'- aGA-GCGCU--GCGUua----CGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 21940 0.69 0.657189
Target:  5'- --cCGCGACGCcacggGCCcuucacgGCCGGGCa- -3'
miRNA:   3'- agaGCGCUGCGuua--CGG-------UGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 22382 0.68 0.717892
Target:  5'- --gCGUGGCGCGggccGUGCCccACCuGGGCUa -3'
miRNA:   3'- agaGCGCUGCGU----UACGG--UGG-CCCGAc -5'
5933 5' -58.5 NC_001806.1 + 22443 0.69 0.607804
Target:  5'- cCUgGCGcACGCGGcgGCCGCCGuGGCc- -3'
miRNA:   3'- aGAgCGC-UGCGUUa-CGGUGGC-CCGac -5'
5933 5' -58.5 NC_001806.1 + 22643 0.7 0.58772
Target:  5'- ---aGCG-CGCGGUGcCCGCCGGGUa- -3'
miRNA:   3'- agagCGCuGCGUUAC-GGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 23458 0.71 0.499578
Target:  5'- --cCGCGGCGCcccggGCCGCCGcGGCg- -3'
miRNA:   3'- agaGCGCUGCGuua--CGGUGGC-CCGac -5'
5933 5' -58.5 NC_001806.1 + 23712 0.71 0.49012
Target:  5'- -aUCGCcGCGCGGUG-CGCCGGGCc- -3'
miRNA:   3'- agAGCGcUGCGUUACgGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 23890 0.7 0.56776
Target:  5'- aCgugCGCGugGUggUGCUguacucgccgcuGCCGGGCg- -3'
miRNA:   3'- aGa--GCGCugCGuuACGG------------UGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 24307 0.67 0.727643
Target:  5'- ---gGCGGCGCGGgaccugcGCCGCaCGGuGCUGg -3'
miRNA:   3'- agagCGCUGCGUUa------CGGUG-GCC-CGAC- -5'
5933 5' -58.5 NC_001806.1 + 26981 0.73 0.400739
Target:  5'- gCUCGUGGgccCGCGAgcggGCCgACCGGGCUc -3'
miRNA:   3'- aGAGCGCU---GCGUUa---CGG-UGGCCCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.