Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 87604 | 0.66 | 0.468446 |
Target: 5'- aCAGCUggCCCACCagCAGGGAauccuguaugcaguaCUCGCCGAu -3' miRNA: 3'- -GUCGG--GGGUGG--GUCCCUg--------------GGGUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 41214 | 0.66 | 0.467567 |
Target: 5'- gAGCCCCgCgccuaaagugGCCCAGGG-CCUCguggaGCCGGc -3' miRNA: 3'- gUCGGGG-G----------UGGGUCCCuGGGG-----UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 65653 | 0.66 | 0.467567 |
Target: 5'- gCGGCCUCCcCCUGGGuGGCUgCGCUGGg -3' miRNA: 3'- -GUCGGGGGuGGGUCC-CUGGgGUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 100082 | 0.66 | 0.467567 |
Target: 5'- -cGaCCCCCGgacCCCAGGGuCUCCcgcgGCCGGc -3' miRNA: 3'- guC-GGGGGU---GGGUCCCuGGGG----UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 44282 | 0.66 | 0.467567 |
Target: 5'- -cGCCCCCGCaaCCAGGagcugggcGACCUuggCGCCGGc -3' miRNA: 3'- guCGGGGGUG--GGUCC--------CUGGG---GUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 56908 | 0.67 | 0.458827 |
Target: 5'- uCAGCCCgCCGacgaccaucCCCAGGGugCCgA-CGAa -3' miRNA: 3'- -GUCGGG-GGU---------GGGUCCCugGGgUgGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 3366 | 0.67 | 0.458827 |
Target: 5'- gGGCCCCggccaGCCCcGGGACggCCGCCa- -3' miRNA: 3'- gUCGGGGg----UGGGuCCCUGg-GGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 26628 | 0.67 | 0.450174 |
Target: 5'- aCAGCCCCCcgcccgagccgGCgCCAGaGGCCCgGCCc- -3' miRNA: 3'- -GUCGGGGG-----------UG-GGUCcCUGGGgUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 38699 | 0.67 | 0.450174 |
Target: 5'- -cGCCCCCcgggCGGGGcCCCCGCCc- -3' miRNA: 3'- guCGGGGGugg-GUCCCuGGGGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 73098 | 0.67 | 0.450174 |
Target: 5'- uCGGCaCCCCccgACCCGGccGGGCCgCCggucGCCGAg -3' miRNA: 3'- -GUCG-GGGG---UGGGUC--CCUGG-GG----UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 73438 | 0.67 | 0.450174 |
Target: 5'- gGGCCCggacgcaCACCCAGGccgggguggccGGCCCgGCCGc -3' miRNA: 3'- gUCGGGg------GUGGGUCC-----------CUGGGgUGGCu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 7791 | 0.67 | 0.450174 |
Target: 5'- -cGCCCCCgGCUaCAGGGGCCauguugggCCGCCa- -3' miRNA: 3'- guCGGGGG-UGG-GUCCCUGG--------GGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 49729 | 0.67 | 0.450174 |
Target: 5'- -cGCCCUaGCCCuGGGGCauCCgGCCGGg -3' miRNA: 3'- guCGGGGgUGGGuCCCUG--GGgUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 69425 | 0.67 | 0.450174 |
Target: 5'- -cGUCCCCGCgC--GGACgCCCACCGGc -3' miRNA: 3'- guCGGGGGUGgGucCCUG-GGGUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 144319 | 0.67 | 0.449313 |
Target: 5'- --cCCCCCGCCCGuguGGGuauccggccccccGCCCCgcGCCGGu -3' miRNA: 3'- gucGGGGGUGGGU---CCC-------------UGGGG--UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 48368 | 0.67 | 0.449313 |
Target: 5'- aCGGCCCCCccgaccgaugucaGCCUGGGGgacgaGCUCCACUu- -3' miRNA: 3'- -GUCGGGGG-------------UGGGUCCC-----UGGGGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 28681 | 0.67 | 0.445026 |
Target: 5'- gAGCCgCCCGCcauauuugggggacgCCGuGGGACCCCcgacuCCGGu -3' miRNA: 3'- gUCGG-GGGUG---------------GGU-CCCUGGGGu----GGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 52740 | 0.67 | 0.441612 |
Target: 5'- gGGCCCCCGCuuCCGGaugcgaacGACCCgguCGCCGAg -3' miRNA: 3'- gUCGGGGGUG--GGUCc-------CUGGG---GUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 23782 | 0.67 | 0.433142 |
Target: 5'- --aCCCCCACCCccacGGGGCCgCCggggGCCGc -3' miRNA: 3'- gucGGGGGUGGGu---CCCUGG-GG----UGGCu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 4362 | 0.67 | 0.433142 |
Target: 5'- gCGGCCCgCggagGCCgCGGGGGuCCUCGCCGc -3' miRNA: 3'- -GUCGGGgG----UGG-GUCCCU-GGGGUGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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