miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 80086 0.81 0.055149
Target:  5'- --cCCUUCACCCuGGGACCCCGCCGAc -3'
miRNA:   3'- gucGGGGGUGGGuCCCUGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 145001 0.79 0.065865
Target:  5'- gGGCCCCgGCCCGGGG-CCCCACa-- -3'
miRNA:   3'- gUCGGGGgUGGGUCCCuGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 78926 0.78 0.084714
Target:  5'- gCGGCCCCuCGCCCGGGG--CCCGCCGu -3'
miRNA:   3'- -GUCGGGG-GUGGGUCCCugGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 144957 0.78 0.084714
Target:  5'- cCGGCCCCCguggcggcccgGCCCGGGG-CCCCGgCGGa -3'
miRNA:   3'- -GUCGGGGG-----------UGGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 21510 0.77 0.09108
Target:  5'- gGGCCCCgGCCCGGGGccgcgaacgggagGCCCCGCUa- -3'
miRNA:   3'- gUCGGGGgUGGGUCCC-------------UGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 21134 0.77 0.091308
Target:  5'- -cGCCCCgGCuCCccGGGCCCCACCGAc -3'
miRNA:   3'- guCGGGGgUG-GGucCCUGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 21819 0.76 0.111349
Target:  5'- -cGCCCCCGCCCGGGccACCCCcccucuCCGAg -3'
miRNA:   3'- guCGGGGGUGGGUCCc-UGGGGu-----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 30724 0.75 0.132194
Target:  5'- uCGGCCCCgACCCccgcGGGGGCCgccucuuccgCCGCCGGg -3'
miRNA:   3'- -GUCGGGGgUGGG----UCCCUGG----------GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 30269 0.75 0.140134
Target:  5'- cCGGCCCCCGcgccccggccCCCGGGGcggagccggccgcccGCCCCGCgGAc -3'
miRNA:   3'- -GUCGGGGGU----------GGGUCCC---------------UGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 70330 0.75 0.142187
Target:  5'- -cGCCCuggCCGCCCGGGGggugcugcaggACCUCGCCGAg -3'
miRNA:   3'- guCGGG---GGUGGGUCCC-----------UGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4945 0.75 0.145668
Target:  5'- uCGGUgCCCGCCgCGGGGGCCCUcccgucccGCCGGg -3'
miRNA:   3'- -GUCGgGGGUGG-GUCCCUGGGG--------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 102051 0.74 0.152499
Target:  5'- uGGCCCCCgagucggACCCGGaGGCCCCACgGGc -3'
miRNA:   3'- gUCGGGGG-------UGGGUCcCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 50950 0.74 0.152866
Target:  5'- gGGCCCCCGugUCCGGGacggcaGACCCCGCCu- -3'
miRNA:   3'- gUCGGGGGU--GGGUCC------CUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 115862 0.74 0.156585
Target:  5'- gGGCCCCauaaaACCCAagccGGGACUCCGCgGAc -3'
miRNA:   3'- gUCGGGGg----UGGGU----CCCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 22907 0.74 0.160001
Target:  5'- cCAGCCCCCcgcggccggagggACCCGcGGGCCCCGCUu- -3'
miRNA:   3'- -GUCGGGGG-------------UGGGUcCCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 4169 0.74 0.160001
Target:  5'- aCAGCaCCCGCCCcgggggcGGGGGCCCggCGCCGGg -3'
miRNA:   3'- -GUCGgGGGUGGG-------UCCCUGGG--GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 115394 0.74 0.160385
Target:  5'- gGGCCUaCCACCuCAacGGGGCCUCGCCGGu -3'
miRNA:   3'- gUCGGG-GGUGG-GU--CCCUGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 120805 0.74 0.168236
Target:  5'- uGGCCCCCGCCUcuGGGGuuugcccuccCCCCGCCc- -3'
miRNA:   3'- gUCGGGGGUGGG--UCCCu---------GGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 137679 0.74 0.168236
Target:  5'- uGGCCCcggCCACCCAcGGGGCgCUGCCGGc -3'
miRNA:   3'- gUCGGG---GGUGGGU-CCCUGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 5045 0.74 0.168236
Target:  5'- -cGCgCCCCACCCGaGGGCCCC-CCGc -3'
miRNA:   3'- guCG-GGGGUGGGUcCCUGGGGuGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.