miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 1362 0.69 0.339425
Target:  5'- -cGCCCCCAgcaccUCCAcGGcCCCCGCCGc -3'
miRNA:   3'- guCGGGGGU-----GGGUcCCuGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 2104 0.66 0.503347
Target:  5'- gCAGCCCCagaaACuCCAcGG-CCCCGgCGAa -3'
miRNA:   3'- -GUCGGGGg---UG-GGUcCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 2302 0.71 0.249815
Target:  5'- gCGGCCCCC-CCgAGG--CCCCGCCGc -3'
miRNA:   3'- -GUCGGGGGuGGgUCCcuGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 2712 0.67 0.407503
Target:  5'- -cGCCagCCGCCCAGGGggucgggGCCCUcggcggGCCGGc -3'
miRNA:   3'- guCGGg-GGUGGGUCCC-------UGGGG------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 3125 0.69 0.332312
Target:  5'- gGGUCCCgCggcagcgcgggGCCCAGGG-CCCCGgCGAc -3'
miRNA:   3'- gUCGGGG-G-----------UGGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 3366 0.67 0.458827
Target:  5'- gGGCCCCggccaGCCCcGGGACggCCGCCa- -3'
miRNA:   3'- gUCGGGGg----UGGGuCCCUGg-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 3407 0.66 0.51248
Target:  5'- aAGCCCUCGgCCAGcgccuccaGGAUCCCGCgGc -3'
miRNA:   3'- gUCGGGGGUgGGUC--------CCUGGGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 4128 0.67 0.416492
Target:  5'- -cGCCCCCcagagGCCCGGGcGGCUgucgcccaggCCGCCGu -3'
miRNA:   3'- guCGGGGG-----UGGGUCC-CUGG----------GGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 4169 0.74 0.160001
Target:  5'- aCAGCaCCCGCCCcgggggcGGGGGCCCggCGCCGGg -3'
miRNA:   3'- -GUCGgGGGUGGG-------UCCCUGGG--GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4274 0.66 0.503347
Target:  5'- cCAGCUcgaCCCGCCgGGGcuGCCCgGCCGu -3'
miRNA:   3'- -GUCGG---GGGUGGgUCCc-UGGGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 4362 0.67 0.433142
Target:  5'- gCGGCCCgCggagGCCgCGGGGGuCCUCGCCGc -3'
miRNA:   3'- -GUCGGGgG----UGG-GUCCCU-GGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 4445 0.71 0.233354
Target:  5'- gCGGCgUCCGCCCGGGGGCU--GCCGGc -3'
miRNA:   3'- -GUCGgGGGUGGGUCCCUGGggUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4737 0.71 0.233354
Target:  5'- gCGGCCCCgGgCCGGGG-CCCgguCGCCGGc -3'
miRNA:   3'- -GUCGGGGgUgGGUCCCuGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4945 0.75 0.145668
Target:  5'- uCGGUgCCCGCCgCGGGGGCCCUcccgucccGCCGGg -3'
miRNA:   3'- -GUCGgGGGUGG-GUCCCUGGGG--------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 5045 0.74 0.168236
Target:  5'- -cGCgCCCCACCCGaGGGCCCC-CCGc -3'
miRNA:   3'- guCG-GGGGUGGGUcCCUGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 5521 0.73 0.176429
Target:  5'- cCGGCCCCCcgccccCCCGGcGGGCCCaCcCCGAa -3'
miRNA:   3'- -GUCGGGGGu-----GGGUC-CCUGGG-GuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 5579 0.66 0.476393
Target:  5'- -cGCCCCgacgccggCACgCCGGGGGCCCgugGCCGc -3'
miRNA:   3'- guCGGGG--------GUG-GGUCCCUGGGg--UGGCu -5'
5934 3' -65.3 NC_001806.1 + 5821 0.66 0.4853
Target:  5'- gAGCCCCgcgCGCCCGuuggccguccccGGG-CCCC-CCGGu -3'
miRNA:   3'- gUCGGGG---GUGGGU------------CCCuGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 7337 0.66 0.476393
Target:  5'- gAGCUCCCAgagacCCCAGGGuaccgcgugACCCCAggGAu -3'
miRNA:   3'- gUCGGGGGU-----GGGUCCC---------UGGGGUggCU- -5'
5934 3' -65.3 NC_001806.1 + 7402 0.66 0.476393
Target:  5'- gAGCCCCgGucucCCCGGGaGCCCCGgucuccCCGGg -3'
miRNA:   3'- gUCGGGGgU----GGGUCCcUGGGGU------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.