miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 5' -57.9 NC_001806.1 + 111222 0.66 0.849363
Target:  5'- --cCGGGGCc-UCGAuGUGGGUGGcGGc -3'
miRNA:   3'- cuaGCUCCGcuAGCU-CACCCACC-CCu -5'
5934 5' -57.9 NC_001806.1 + 20711 0.66 0.833399
Target:  5'- -uUCGGGGUGGgcccgcCGGGgGGGcGGGGGg -3'
miRNA:   3'- cuAGCUCCGCUa-----GCUCaCCCaCCCCU- -5'
5934 5' -57.9 NC_001806.1 + 34384 0.66 0.825149
Target:  5'- --cCGAGGUGggUGGGUGGGcGGcGGu -3'
miRNA:   3'- cuaGCUCCGCuaGCUCACCCaCC-CCu -5'
5934 5' -57.9 NC_001806.1 + 11825 0.67 0.808147
Target:  5'- ---nGuGGUGGUCGAGgGGGUGGaGGc -3'
miRNA:   3'- cuagCuCCGCUAGCUCaCCCACC-CCu -5'
5934 5' -57.9 NC_001806.1 + 29003 0.67 0.808147
Target:  5'- --cUGAGGCGGagacCGaAGUGGGggggcggGGGGAc -3'
miRNA:   3'- cuaGCUCCGCUa---GC-UCACCCa------CCCCU- -5'
5934 5' -57.9 NC_001806.1 + 38942 0.67 0.808147
Target:  5'- --aUGAcGCG-UCGGGUGGGUGGGc- -3'
miRNA:   3'- cuaGCUcCGCuAGCUCACCCACCCcu -5'
5934 5' -57.9 NC_001806.1 + 11307 0.67 0.790529
Target:  5'- ---gGAGGCGuUgGGGUGGGUGucguGGGGu -3'
miRNA:   3'- cuagCUCCGCuAgCUCACCCAC----CCCU- -5'
5934 5' -57.9 NC_001806.1 + 29993 0.67 0.781509
Target:  5'- --cCGGGGgGGUUGGGguugGGGuUGGGGu -3'
miRNA:   3'- cuaGCUCCgCUAGCUCa---CCC-ACCCCu -5'
5934 5' -57.9 NC_001806.1 + 42320 0.67 0.77236
Target:  5'- uGUCGGGGCG---GGG-GGcGUGGGGAa -3'
miRNA:   3'- cUAGCUCCGCuagCUCaCC-CACCCCU- -5'
5934 5' -57.9 NC_001806.1 + 145661 0.68 0.744222
Target:  5'- --cCGGGGUGAUCucuggcacgcggGGGUGGGaagggucgGGGGAg -3'
miRNA:   3'- cuaGCUCCGCUAG------------CUCACCCa-------CCCCU- -5'
5934 5' -57.9 NC_001806.1 + 5085 0.68 0.715231
Target:  5'- -cUCGGGGUGggCGgcggcccgucGGUGGGgcccGGGGAg -3'
miRNA:   3'- cuAGCUCCGCuaGC----------UCACCCa---CCCCU- -5'
5934 5' -57.9 NC_001806.1 + 49175 0.69 0.705418
Target:  5'- --gCG-GGCGAUgGGGUGGGguucaUGGGGu -3'
miRNA:   3'- cuaGCuCCGCUAgCUCACCC-----ACCCCu -5'
5934 5' -57.9 NC_001806.1 + 2795 0.69 0.695547
Target:  5'- --cCGGGGCGccgCGGGcUGGGcGGGGGc -3'
miRNA:   3'- cuaGCUCCGCua-GCUC-ACCCaCCCCU- -5'
5934 5' -57.9 NC_001806.1 + 8203 0.7 0.63553
Target:  5'- --aCGuc-CGAacgCGAGUGGGUGGGGAa -3'
miRNA:   3'- cuaGCuccGCUa--GCUCACCCACCCCU- -5'
5934 5' -57.9 NC_001806.1 + 32797 0.7 0.61542
Target:  5'- --cCGGGGCGcccucgaCGAGUGGGauaacgGGGGAg -3'
miRNA:   3'- cuaGCUCCGCua-----GCUCACCCa-----CCCCU- -5'
5934 5' -57.9 NC_001806.1 + 15084 0.7 0.595358
Target:  5'- -cUCGGGGCGcgCGGGggaguuguUGGGaucgGGGGAu -3'
miRNA:   3'- cuAGCUCCGCuaGCUC--------ACCCa---CCCCU- -5'
5934 5' -57.9 NC_001806.1 + 56670 0.7 0.595358
Target:  5'- gGAUCGuuGGGgGGUCGGG-GGGgacGGGGGc -3'
miRNA:   3'- -CUAGC--UCCgCUAGCUCaCCCa--CCCCU- -5'
5934 5' -57.9 NC_001806.1 + 148392 0.7 0.595358
Target:  5'- --cCGuGGUGGgcucCGGGUGGGUGGGcGAc -3'
miRNA:   3'- cuaGCuCCGCUa---GCUCACCCACCC-CU- -5'
5934 5' -57.9 NC_001806.1 + 93703 0.71 0.555598
Target:  5'- --gUGAGG-GGUUGGG-GGGUGGGGGa -3'
miRNA:   3'- cuaGCUCCgCUAGCUCaCCCACCCCU- -5'
5934 5' -57.9 NC_001806.1 + 11788 0.72 0.535999
Target:  5'- uGGUCGAgggagcggggauGGUGGUCGAGgGGGUGGaGGu -3'
miRNA:   3'- -CUAGCU------------CCGCUAGCUCaCCCACC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.