miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 3' -60 NC_001806.1 + 32944 0.75 0.23357
Target:  5'- cGGGCcguuguggGGCCCCGGGCCGGGgccCCUUGGg -3'
miRNA:   3'- uCCCG--------CCGGGGCUUGGUUC---GGAACUa -5'
5935 3' -60 NC_001806.1 + 5894 0.73 0.323553
Target:  5'- cGGGCGGCCCaaGGGCCGcccGCCUUGc- -3'
miRNA:   3'- uCCCGCCGGGg-CUUGGUu--CGGAACua -5'
5935 3' -60 NC_001806.1 + 34412 0.72 0.353604
Target:  5'- cGGGCcgGGCCgggCCGGGCCGGGCCgggUGGg -3'
miRNA:   3'- uCCCG--CCGG---GGCUUGGUUCGGa--ACUa -5'
5935 3' -60 NC_001806.1 + 134248 0.72 0.369353
Target:  5'- gGGGGCGGCCCCG-GC--AGCCggaaUGAg -3'
miRNA:   3'- -UCCCGCCGGGGCuUGguUCGGa---ACUa -5'
5935 3' -60 NC_001806.1 + 32986 0.72 0.377405
Target:  5'- -cGG-GGCCCCGGGCCGGGCCg---- -3'
miRNA:   3'- ucCCgCCGGGGCUUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 2941 0.72 0.377405
Target:  5'- cGGGCGGCC--GGGCCGGGCCggGAc -3'
miRNA:   3'- uCCCGCCGGggCUUGGUUCGGaaCUa -5'
5935 3' -60 NC_001806.1 + 150109 0.71 0.402261
Target:  5'- cGGGGCGGCCCCGuccccgggGACCAAcCCg---- -3'
miRNA:   3'- -UCCCGCCGGGGC--------UUGGUUcGGaacua -5'
5935 3' -60 NC_001806.1 + 131970 0.71 0.410774
Target:  5'- -uGGCGGCCCUGGagcgccagACCGGGCCggUGGc -3'
miRNA:   3'- ucCCGCCGGGGCU--------UGGUUCGGa-ACUa -5'
5935 3' -60 NC_001806.1 + 120139 0.71 0.419398
Target:  5'- cAGGGCGGCCCgCGAAUCucacagcGCCUg--- -3'
miRNA:   3'- -UCCCGCCGGG-GCUUGGuu-----CGGAacua -5'
5935 3' -60 NC_001806.1 + 3141 0.71 0.428131
Target:  5'- cGGGGCccagGGCCCCGGcgACCAGGCUc---- -3'
miRNA:   3'- -UCCCG----CCGGGGCU--UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 106714 0.7 0.454959
Target:  5'- cGGGCGGCCCCcGGuAUCGGGUCUUu-- -3'
miRNA:   3'- uCCCGCCGGGG-CU-UGGUUCGGAAcua -5'
5935 3' -60 NC_001806.1 + 34314 0.7 0.464102
Target:  5'- gGGGGCGGCgCgCCGGACgGGGCgCUgGAg -3'
miRNA:   3'- -UCCCGCCG-G-GGCUUGgUUCG-GAaCUa -5'
5935 3' -60 NC_001806.1 + 147298 0.7 0.47334
Target:  5'- cAGGGgGGUCCCGGGCCcacccuGGCCg---- -3'
miRNA:   3'- -UCCCgCCGGGGCUUGGu-----UCGGaacua -5'
5935 3' -60 NC_001806.1 + 4722 0.7 0.48267
Target:  5'- cGGGGCcucccguucgcGGCCCCGGGCCGGGgCCc---- -3'
miRNA:   3'- -UCCCG-----------CCGGGGCUUGGUUC-GGaacua -5'
5935 3' -60 NC_001806.1 + 20310 0.7 0.48267
Target:  5'- uGGGGCGGUCCCGcccGCC-GGCCa---- -3'
miRNA:   3'- -UCCCGCCGGGGCu--UGGuUCGGaacua -5'
5935 3' -60 NC_001806.1 + 22305 0.69 0.501588
Target:  5'- cGGGGacguGGCgCUGGACCAGGCCUgcuuccgGAUc -3'
miRNA:   3'- -UCCCg---CCGgGGCUUGGUUCGGAa------CUA- -5'
5935 3' -60 NC_001806.1 + 126572 0.69 0.511169
Target:  5'- -aGGCGGUgcuccgCCgCGGAUCGGGCCUUGGUg -3'
miRNA:   3'- ucCCGCCG------GG-GCUUGGUUCGGAACUA- -5'
5935 3' -60 NC_001806.1 + 119525 0.69 0.520826
Target:  5'- cAGGGC-GCCCUGGuucACCAGGCCg---- -3'
miRNA:   3'- -UCCCGcCGGGGCU---UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 20351 0.69 0.520826
Target:  5'- cGGGCGGCCCuUGGGCCGcccGCCg---- -3'
miRNA:   3'- uCCCGCCGGG-GCUUGGUu--CGGaacua -5'
5935 3' -60 NC_001806.1 + 151296 0.69 0.530552
Target:  5'- gGGGGCGGCggCGGuggGCCGGGCCUcUGGc -3'
miRNA:   3'- -UCCCGCCGggGCU---UGGUUCGGA-ACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.