miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 3' -60 NC_001806.1 + 2525 0.66 0.720563
Target:  5'- gGGGGCGGgCCCGGcgcACCGcgcggcgaucgaGGCCa---- -3'
miRNA:   3'- -UCCCGCCgGGGCU---UGGU------------UCGGaacua -5'
5935 3' -60 NC_001806.1 + 2941 0.72 0.377405
Target:  5'- cGGGCGGCC--GGGCCGGGCCggGAc -3'
miRNA:   3'- uCCCGCCGGggCUUGGUUCGGaaCUa -5'
5935 3' -60 NC_001806.1 + 3141 0.71 0.428131
Target:  5'- cGGGGCccagGGCCCCGGcgACCAGGCUc---- -3'
miRNA:   3'- -UCCCG----CCGGGGCU--UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 3360 0.66 0.690883
Target:  5'- cGGGCcgGGCCCCG-GCC-AGCCccggGAc -3'
miRNA:   3'- uCCCG--CCGGGGCuUGGuUCGGaa--CUa -5'
5935 3' -60 NC_001806.1 + 3801 0.66 0.710732
Target:  5'- -cGGCGGCCgCCGcgugcGCCAGGCCc---- -3'
miRNA:   3'- ucCCGCCGG-GGCu----UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 4080 0.66 0.724475
Target:  5'- cGGGGCgcccgaGGCCUCGAACCGGcgucgcgccuccuccGCCUcGGg -3'
miRNA:   3'- -UCCCG------CCGGGGCUUGGUU---------------CGGAaCUa -5'
5935 3' -60 NC_001806.1 + 4183 0.69 0.530552
Target:  5'- gGGGGCgggGGCCCgGcGCCGGGCCa---- -3'
miRNA:   3'- -UCCCG---CCGGGgCuUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 4722 0.7 0.48267
Target:  5'- cGGGGCcucccguucgcGGCCCCGGGCCGGGgCCc---- -3'
miRNA:   3'- -UCCCG-----------CCGGGGCUUGGUUC-GGaacua -5'
5935 3' -60 NC_001806.1 + 5894 0.73 0.323553
Target:  5'- cGGGCGGCCCaaGGGCCGcccGCCUUGc- -3'
miRNA:   3'- uCCCGCCGGGg-CUUGGUu--CGGAACua -5'
5935 3' -60 NC_001806.1 + 9727 0.66 0.73032
Target:  5'- cAGGGCGGCCCCcaucACCGccCCUa--- -3'
miRNA:   3'- -UCCCGCCGGGGcu--UGGUucGGAacua -5'
5935 3' -60 NC_001806.1 + 18793 0.67 0.660773
Target:  5'- -cGGUGGCgUCGAAUCGAGCCUccaccucccguaUGGUg -3'
miRNA:   3'- ucCCGCCGgGGCUUGGUUCGGA------------ACUA- -5'
5935 3' -60 NC_001806.1 + 20310 0.7 0.48267
Target:  5'- uGGGGCGGUCCCGcccGCC-GGCCa---- -3'
miRNA:   3'- -UCCCGCCGGGGCu--UGGuUCGGaacua -5'
5935 3' -60 NC_001806.1 + 20351 0.69 0.520826
Target:  5'- cGGGCGGCCCuUGGGCCGcccGCCg---- -3'
miRNA:   3'- uCCCGCCGGG-GCUUGGUu--CGGaacua -5'
5935 3' -60 NC_001806.1 + 22305 0.69 0.501588
Target:  5'- cGGGGacguGGCgCUGGACCAGGCCUgcuuccgGAUc -3'
miRNA:   3'- -UCCCg---CCGgGGCUUGGUUCGGAa------CUA- -5'
5935 3' -60 NC_001806.1 + 22454 0.67 0.620347
Target:  5'- -cGGCGGCCgCCGuGGCCAugAGCCgccGAUa -3'
miRNA:   3'- ucCCGCCGG-GGC-UUGGU--UCGGaa-CUA- -5'
5935 3' -60 NC_001806.1 + 24540 0.68 0.580057
Target:  5'- gGGcGGCGGCCUCGGggaccACCGAcGCCaUGGc -3'
miRNA:   3'- -UC-CCGCCGGGGCU-----UGGUU-CGGaACUa -5'
5935 3' -60 NC_001806.1 + 27458 0.69 0.540344
Target:  5'- uGGGCGGCCCCG-GCCGc-CCUUc-- -3'
miRNA:   3'- uCCCGCCGGGGCuUGGUucGGAAcua -5'
5935 3' -60 NC_001806.1 + 27776 0.66 0.680883
Target:  5'- cGGGUugGGCCCCcaaaucggGGGCCGGGCCg---- -3'
miRNA:   3'- uCCCG--CCGGGG--------CUUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 29938 0.67 0.640574
Target:  5'- cGGGGCGGCuCCCGccaguCgCGAGCCg---- -3'
miRNA:   3'- -UCCCGCCG-GGGCuu---G-GUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 32944 0.75 0.23357
Target:  5'- cGGGCcguuguggGGCCCCGGGCCGGGgccCCUUGGg -3'
miRNA:   3'- uCCCG--------CCGGGGCUUGGUUC---GGAACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.