miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 5' -64.9 NC_001806.1 + 77930 0.75 0.14402
Target:  5'- gUcgCUGGGCCCAGCUGgaauGGGGgGGUg -3'
miRNA:   3'- gGuaGGCCCGGGUCGAC----CCCCgCCAg -5'
5935 5' -64.9 NC_001806.1 + 149017 0.75 0.147191
Target:  5'- aCAUCCGGGgCgGGCUaaggggaaaaaagGGGGGCGGg- -3'
miRNA:   3'- gGUAGGCCCgGgUCGA-------------CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 34420 0.75 0.147548
Target:  5'- gCCGggCCGGGCCgGGCcgGGuGGGCGGg- -3'
miRNA:   3'- -GGUa-GGCCCGGgUCGa-CC-CCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 6076 0.75 0.154839
Target:  5'- cCCGggggCGGGCCCgGGCggcgGGGGGCgGGUCu -3'
miRNA:   3'- -GGUag--GCCCGGG-UCGa---CCCCCG-CCAG- -5'
5935 5' -64.9 NC_001806.1 + 113398 0.74 0.162456
Target:  5'- aCGcCCgGGGCCUggAGCUGGGGGUGGg- -3'
miRNA:   3'- gGUaGG-CCCGGG--UCGACCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 4972 0.74 0.174514
Target:  5'- uCCcgCCGGGCgUcgucgAGUcgUGGGGGUGGUCg -3'
miRNA:   3'- -GGuaGGCCCGgG-----UCG--ACCCCCGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 131377 0.72 0.230997
Target:  5'- aCCGaggCCuGGCCCAugauGCaGGGGGCGGUg -3'
miRNA:   3'- -GGUa--GGcCCGGGU----CGaCCCCCGCCAg -5'
5935 5' -64.9 NC_001806.1 + 117040 0.72 0.230997
Target:  5'- gCUAUCCcuaaGGCCCGGCUagacccacggGGGGGUGGg- -3'
miRNA:   3'- -GGUAGGc---CCGGGUCGA----------CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 55486 0.71 0.253
Target:  5'- gCCGUaCCGGGCCaa--UGGGucgcGGCGGUCg -3'
miRNA:   3'- -GGUA-GGCCCGGgucgACCC----CCGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 151257 0.71 0.258764
Target:  5'- gCCccCCGGGCCCAcGCcGGGcGGUGGg- -3'
miRNA:   3'- -GGuaGGCCCGGGU-CGaCCC-CCGCCag -5'
5935 5' -64.9 NC_001806.1 + 20707 0.71 0.258764
Target:  5'- uCCGUUCgggguGGGCCC-GCcggGGGGGCGGg- -3'
miRNA:   3'- -GGUAGG-----CCCGGGuCGa--CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 34033 0.71 0.264634
Target:  5'- aUCGaCCGGGCUCAG-UGGGGGCGuGg- -3'
miRNA:   3'- -GGUaGGCCCGGGUCgACCCCCGC-Cag -5'
5935 5' -64.9 NC_001806.1 + 88367 0.71 0.276699
Target:  5'- gCCAUCgGGGCcgCCGGCUGGGcuaGCGuGUUg -3'
miRNA:   3'- -GGUAGgCCCG--GGUCGACCCc--CGC-CAG- -5'
5935 5' -64.9 NC_001806.1 + 4730 0.71 0.276699
Target:  5'- cCCGUUCGcGGCCCcgGGCcGGGGccCGGUCg -3'
miRNA:   3'- -GGUAGGC-CCGGG--UCGaCCCCc-GCCAG- -5'
5935 5' -64.9 NC_001806.1 + 22060 0.7 0.295612
Target:  5'- cCCGgcgCCGGGCCCccGCccccGGGGCGGg- -3'
miRNA:   3'- -GGUa--GGCCCGGGu-CGac--CCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 120121 0.7 0.302136
Target:  5'- gCCAUCCGGGCCgC-GCUucaGGGCGGcCc -3'
miRNA:   3'- -GGUAGGCCCGG-GuCGAcc-CCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 26679 0.7 0.308771
Target:  5'- cCCGgccCCGGcccccaccGCCCGGCgugggcccgGGGGGCGGg- -3'
miRNA:   3'- -GGUa--GGCC--------CGGGUCGa--------CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 83244 0.7 0.322372
Target:  5'- cCCcUCaaGGGCCC-GCggGGGGGCGGg- -3'
miRNA:   3'- -GGuAGg-CCCGGGuCGa-CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 132677 0.7 0.322372
Target:  5'- gCCGcgcUCCuggGGGCCUGGCccgcggUGGGGGCcagGGUCg -3'
miRNA:   3'- -GGU---AGG---CCCGGGUCG------ACCCCCG---CCAG- -5'
5935 5' -64.9 NC_001806.1 + 83773 0.69 0.327936
Target:  5'- gCCAcCCGGGCCCucaucggaaccuuGGCcuccGGGGGCgaggagggggcggGGUCg -3'
miRNA:   3'- -GGUaGGCCCGGG-------------UCGa---CCCCCG-------------CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.