miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 5' -64.9 NC_001806.1 + 1414 0.67 0.429737
Target:  5'- cCCGUggCCGaGGCCCAGCgaaucccGGGCGG-Cg -3'
miRNA:   3'- -GGUA--GGC-CCGGGUCGacc----CCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 1503 0.67 0.472865
Target:  5'- gUCGUCguCGGGCuCCAGCaGGGcGCGGg- -3'
miRNA:   3'- -GGUAG--GCCCG-GGUCGaCCCcCGCCag -5'
5935 5' -64.9 NC_001806.1 + 2802 0.69 0.343602
Target:  5'- gCCG--CGGGCUgGGC-GGGGGCGGg- -3'
miRNA:   3'- -GGUagGCCCGGgUCGaCCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 3026 0.67 0.435637
Target:  5'- gCGUCCGGuGCgcuggccgccgccgCCAGCaGGGGGCGcaggcucugguuGUCa -3'
miRNA:   3'- gGUAGGCC-CG--------------GGUCGaCCCCCGC------------CAG- -5'
5935 5' -64.9 NC_001806.1 + 4730 0.71 0.276699
Target:  5'- cCCGUUCGcGGCCCcgGGCcGGGGccCGGUCg -3'
miRNA:   3'- -GGUAGGC-CCGGG--UCGaCCCCc-GCCAG- -5'
5935 5' -64.9 NC_001806.1 + 4972 0.74 0.174514
Target:  5'- uCCcgCCGGGCgUcgucgAGUcgUGGGGGUGGUCg -3'
miRNA:   3'- -GGuaGGCCCGgG-----UCG--ACCCCCGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 5075 0.68 0.389011
Target:  5'- gCgGUCUGGGCUCgGGgUGGGcGGCGGcCc -3'
miRNA:   3'- -GgUAGGCCCGGG-UCgACCC-CCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 6076 0.75 0.154839
Target:  5'- cCCGggggCGGGCCCgGGCggcgGGGGGCgGGUCu -3'
miRNA:   3'- -GGUag--GCCCGGG-UCGa---CCCCCG-CCAG- -5'
5935 5' -64.9 NC_001806.1 + 10762 0.69 0.336415
Target:  5'- aCCGUCuCGGGCaCCuGCUugGGGGGCa--- -3'
miRNA:   3'- -GGUAG-GCCCG-GGuCGA--CCCCCGccag -5'
5935 5' -64.9 NC_001806.1 + 20372 0.68 0.404998
Target:  5'- gCCGUCCcguuGGuCCCGGCguccGGcGGGCGGg- -3'
miRNA:   3'- -GGUAGGc---CC-GGGUCGa---CC-CCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 20707 0.71 0.258764
Target:  5'- uCCGUUCgggguGGGCCC-GCcggGGGGGCGGg- -3'
miRNA:   3'- -GGUAGG-----CCCGGGuCGa--CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 21912 0.66 0.518067
Target:  5'- gCCG-CCGGGCCCGcGC-GGcGGUGGcCg -3'
miRNA:   3'- -GGUaGGCCCGGGU-CGaCCcCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 22060 0.7 0.295612
Target:  5'- cCCGgcgCCGGGCCCccGCccccGGGGCGGg- -3'
miRNA:   3'- -GGUa--GGCCCGGGu-CGac--CCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 23519 0.66 0.507965
Target:  5'- gCCcgCCgaGGGCCCcgacccccugggcGGCUGGcGGCGG-Ca -3'
miRNA:   3'- -GGuaGG--CCCGGG-------------UCGACCcCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 24507 0.66 0.517145
Target:  5'- aCCG-CCGGGCCguGCUgccggcgcuggacGGccGGGCGG-Cg -3'
miRNA:   3'- -GGUaGGCCCGGguCGA-------------CC--CCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 24875 0.67 0.463186
Target:  5'- gCggCgGGGgCCGuggagguGCUGGGGGCGGa- -3'
miRNA:   3'- gGuaGgCCCgGGU-------CGACCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 25651 0.68 0.381175
Target:  5'- ---cUgGGGCUgGGgaGGGGGCGGUg -3'
miRNA:   3'- gguaGgCCCGGgUCgaCCCCCGCCAg -5'
5935 5' -64.9 NC_001806.1 + 25913 0.68 0.421392
Target:  5'- gCgGUCCGGGCggcgugcgcgcgCgCGGCgggcgUGGGGGCGGg- -3'
miRNA:   3'- -GgUAGGCCCG------------G-GUCG-----ACCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 26679 0.7 0.308771
Target:  5'- cCCGgccCCGGcccccaccGCCCGGCgugggcccgGGGGGCGGg- -3'
miRNA:   3'- -GGUa--GGCC--------CGGGUCGa--------CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 27001 0.69 0.350165
Target:  5'- gCCGaCCGGGCUCGGUUccggcgccGGGuggcggaggccgaGGCGGUCa -3'
miRNA:   3'- -GGUaGGCCCGGGUCGA--------CCC-------------CCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.