Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5937 | 3' | -60.3 | NC_001806.1 | + | 113402 | 0.75 | 0.257293 |
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Target: 5'- cCGGGGCCuGGAgcuggGGGuGGGACGCc-- -3' miRNA: 3'- aGCCCCGG-CCUaa---CCC-CCCUGUGauu -5' |
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| 5937 | 3' | -60.3 | NC_001806.1 | + | 95446 | 0.75 | 0.239762 |
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Target: 5'- -aGGGGCCcGAgacgUGGGGGGACAUc-- -3' miRNA: 3'- agCCCCGGcCUa---ACCCCCCUGUGauu -5' |
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| 5937 | 3' | -60.3 | NC_001806.1 | + | 55375 | 0.77 | 0.170757 |
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Target: 5'- gUCGGGaGCCGGAgcgauugGGGGGGACGg--- -3' miRNA: 3'- -AGCCC-CGGCCUaa-----CCCCCCUGUgauu -5' |
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| 5937 | 3' | -60.3 | NC_001806.1 | + | 14379 | 0.78 | 0.147023 |
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Target: 5'- -gGGGGCUGGggUGaGGGGACACUGGg -3' miRNA: 3'- agCCCCGGCCuaACcCCCCUGUGAUU- -5' |
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| 5937 | 3' | -60.3 | NC_001806.1 | + | 6540 | 0.8 | 0.114072 |
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Target: 5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5' |
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| 5937 | 3' | -60.3 | NC_001806.1 | + | 6496 | 0.8 | 0.114072 |
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Target: 5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5' |
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| 5937 | 3' | -60.3 | NC_001806.1 | + | 6452 | 0.8 | 0.114072 |
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Target: 5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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