miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 3' -60.3 NC_001806.1 + 25619 0.69 0.50689
Target:  5'- cUGGGGCCGGGgagggcuggggcUGGGGaGGGCugggGCUGGg -3'
miRNA:   3'- aGCCCCGGCCUa-----------ACCCC-CCUG----UGAUU- -5'
5937 3' -60.3 NC_001806.1 + 143321 0.7 0.489931
Target:  5'- aUGGuGGUgaGGGgggGGGGGGGCGCUGGu -3'
miRNA:   3'- aGCC-CCGg-CCUaa-CCCCCCUGUGAUU- -5'
5937 3' -60.3 NC_001806.1 + 34784 0.7 0.489931
Target:  5'- uUCGGGGggGGGggGGGGGGGCGg--- -3'
miRNA:   3'- -AGCCCCggCCUaaCCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 27830 0.7 0.489931
Target:  5'- -gGGGcGCCGGGUUGGuccccGGGGACGg--- -3'
miRNA:   3'- agCCC-CGGCCUAACC-----CCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 38811 0.7 0.480624
Target:  5'- gCGGGGacCCGGGcgGGGGuGGAUACg-- -3'
miRNA:   3'- aGCCCC--GGCCUaaCCCC-CCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 30419 0.7 0.480624
Target:  5'- -gGGGGCCGGGcgugGaGGGuGGGCACg-- -3'
miRNA:   3'- agCCCCGGCCUaa--C-CCC-CCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 33629 0.7 0.472322
Target:  5'- -gGGGGCCGGAUacccacacgggcgggGGGGGGGuguCGCg-- -3'
miRNA:   3'- agCCCCGGCCUAa--------------CCCCCCU---GUGauu -5'
5937 3' -60.3 NC_001806.1 + 6518 0.7 0.462275
Target:  5'- nCGGGGgCGGAggaGGGGGGACn---- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5'
5937 3' -60.3 NC_001806.1 + 6474 0.7 0.462275
Target:  5'- nCGGGGgCGGAggaGGGGGGACn---- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5'
5937 3' -60.3 NC_001806.1 + 147826 0.7 0.462275
Target:  5'- -gGGGGCCuguggGGAgaggccgGGGGGGAguCGCUGAu -3'
miRNA:   3'- agCCCCGG-----CCUaa-----CCCCCCU--GUGAUU- -5'
5937 3' -60.3 NC_001806.1 + 25006 0.71 0.435462
Target:  5'- --cGGGCCGGGacgGGGcGGGGCGCUu- -3'
miRNA:   3'- agcCCCGGCCUaa-CCC-CCCUGUGAuu -5'
5937 3' -60.3 NC_001806.1 + 25952 0.71 0.435462
Target:  5'- gCGGGGCCgcgGGAgcGGGGGGAggaGCg-- -3'
miRNA:   3'- aGCCCCGG---CCUaaCCCCCCUg--UGauu -5'
5937 3' -60.3 NC_001806.1 + 4398 0.71 0.434583
Target:  5'- cCGGGGCuugggcgcggccuCGGAgagGGGGGGugGCc-- -3'
miRNA:   3'- aGCCCCG-------------GCCUaa-CCCCCCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 77136 0.71 0.426725
Target:  5'- cCGGGGCCguGGAggagcucGGGGGGCGCg-- -3'
miRNA:   3'- aGCCCCGG--CCUaac----CCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 148159 0.71 0.421534
Target:  5'- -gGGGGCgCGGcggcgccucugcgUGGGGGGGCGCg-- -3'
miRNA:   3'- agCCCCG-GCCua-----------ACCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 6407 0.71 0.39285
Target:  5'- -gGGuGGgCGGAggagGGGGGGACGCg-- -3'
miRNA:   3'- agCC-CCgGCCUaa--CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 151282 0.72 0.384658
Target:  5'- -gGGGGCCGGGgccGGGGGGCGg--- -3'
miRNA:   3'- agCCCCGGCCUaacCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 127396 0.73 0.330562
Target:  5'- cCGGGGUUgaggGGGggGGGGGGACGgUGAu -3'
miRNA:   3'- aGCCCCGG----CCUaaCCCCCCUGUgAUU- -5'
5937 3' -60.3 NC_001806.1 + 37786 0.73 0.309155
Target:  5'- cCGGGGCCGGGgcgcGGGGGucCGCg-- -3'
miRNA:   3'- aGCCCCGGCCUaa--CCCCCcuGUGauu -5'
5937 3' -60.3 NC_001806.1 + 55588 0.74 0.295481
Target:  5'- gUCGGGGgUGGAcgUGGGGGGGCu---- -3'
miRNA:   3'- -AGCCCCgGCCUa-ACCCCCCUGugauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.