Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 30797 | 0.67 | 0.626777 |
Target: 5'- gCGGGGCCGucGGUgcccUGGGaGGGAgACa-- -3' miRNA: 3'- aGCCCCGGC--CUA----ACCC-CCCUgUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 109232 | 0.67 | 0.626777 |
Target: 5'- gUGGGGCCGGGc-GGGGcGGAaucCUGGg -3' miRNA: 3'- aGCCCCGGCCUaaCCCC-CCUgu-GAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 25403 | 0.67 | 0.616765 |
Target: 5'- -aGGGGCgGGAggGGGcgaGGGGCGgUGGu -3' miRNA: 3'- agCCCCGgCCUaaCCC---CCCUGUgAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 54297 | 0.67 | 0.616765 |
Target: 5'- -gGuGGGCgGGAUagaGGGGGGACcaaACUAu -3' miRNA: 3'- agC-CCCGgCCUAa--CCCCCCUG---UGAUu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 25587 | 0.67 | 0.616765 |
Target: 5'- cUGGGGCCGGGgaGGGcuGGGGC-Cg-- -3' miRNA: 3'- aGCCCCGGCCUaaCCC--CCCUGuGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 143242 | 0.67 | 0.616765 |
Target: 5'- cUGGuGGUgCGGGUUGGGGGGGgAUg-- -3' miRNA: 3'- aGCC-CCG-GCCUAACCCCCCUgUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 134218 | 0.68 | 0.600772 |
Target: 5'- gCGGGGUuauaggccacgcaguCGGAgcGGGGGGGCGg--- -3' miRNA: 3'- aGCCCCG---------------GCCUaaCCCCCCUGUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 2851 | 0.68 | 0.596782 |
Target: 5'- gCGcGGGCgCGGGga-GGGGGGCGCg-- -3' miRNA: 3'- aGC-CCCG-GCCUaacCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 32025 | 0.68 | 0.595785 |
Target: 5'- gUGGGGCggaggggUGGGggGGGGGGAgACa-- -3' miRNA: 3'- aGCCCCG-------GCCUaaCCCCCCUgUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 20711 | 0.68 | 0.586824 |
Target: 5'- uUCGGGGUgGGcccgccGGGGGGGCGg--- -3' miRNA: 3'- -AGCCCCGgCCuaa---CCCCCCUGUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 42321 | 0.68 | 0.586824 |
Target: 5'- gUCGGGGCgGGGggcgUGGGGaaucgcguaGGugGCg-- -3' miRNA: 3'- -AGCCCCGgCCUa---ACCCC---------CCugUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 34369 | 0.68 | 0.586824 |
Target: 5'- cCGGGGCUGGGUaucccgaggUGGGuGGGugGg--- -3' miRNA: 3'- aGCCCCGGCCUA---------ACCC-CCCugUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 111331 | 0.68 | 0.576897 |
Target: 5'- aCGGGGgUGGGgcgGGGGGGGgGgUAu -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUgUgAUu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 64662 | 0.68 | 0.567009 |
Target: 5'- -gGGGGCUGccGAauguccugGGGGGGACACg-- -3' miRNA: 3'- agCCCCGGC--CUaa------CCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 147685 | 0.68 | 0.56405 |
Target: 5'- -gGGGGCCGGGgcgcGGGGGcgggccccggaggcGGCGCUc- -3' miRNA: 3'- agCCCCGGCCUaa--CCCCC--------------CUGUGAuu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 34289 | 0.68 | 0.561096 |
Target: 5'- -gGGGGCgGGAUgggguuuagcggcgGGGGGcGGCGCg-- -3' miRNA: 3'- agCCCCGgCCUAa-------------CCCCC-CUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 124087 | 0.68 | 0.557164 |
Target: 5'- cCGGGGCCcgaagcuucgggGGGUcuGGGGGAUACg-- -3' miRNA: 3'- aGCCCCGG------------CCUAacCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 36688 | 0.69 | 0.54444 |
Target: 5'- cCGGGGCCcguaagaacagguuGGugaGGGGGGuCGCUGu -3' miRNA: 3'- aGCCCCGG--------------CCuaaCCCCCCuGUGAUu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 25539 | 0.69 | 0.537628 |
Target: 5'- cUGGGGCCGGGgaGGGcuGGGGCcggggaggGCUGGg -3' miRNA: 3'- aGCCCCGGCCUaaCCC--CCCUG--------UGAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 29110 | 0.69 | 0.50879 |
Target: 5'- cUGGGGCCgcagggcguGGA-UGGGGGGGCGg--- -3' miRNA: 3'- aGCCCCGG---------CCUaACCCCCCUGUgauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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