Results 21 - 40 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 25587 | 0.67 | 0.616765 |
Target: 5'- cUGGGGCCGGGgaGGGcuGGGGC-Cg-- -3' miRNA: 3'- aGCCCCGGCCUaaCCC--CCCUGuGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 25619 | 0.69 | 0.50689 |
Target: 5'- cUGGGGCCGGGgagggcuggggcUGGGGaGGGCugggGCUGGg -3' miRNA: 3'- aGCCCCGGCCUa-----------ACCCC-CCUG----UGAUU- -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 25952 | 0.71 | 0.435462 |
Target: 5'- gCGGGGCCgcgGGAgcGGGGGGAggaGCg-- -3' miRNA: 3'- aGCCCCGG---CCUaaCCCCCCUg--UGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 27329 | 0.67 | 0.626777 |
Target: 5'- uUCGGGGcCCGGcccAUUGGGcGGGAguUACc-- -3' miRNA: 3'- -AGCCCC-GGCC---UAACCC-CCCU--GUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 27830 | 0.7 | 0.489931 |
Target: 5'- -gGGGcGCCGGGUUGGuccccGGGGACGg--- -3' miRNA: 3'- agCCC-CGGCCUAACC-----CCCCUGUgauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 29110 | 0.69 | 0.50879 |
Target: 5'- cUGGGGCCgcagggcguGGA-UGGGGGGGCGg--- -3' miRNA: 3'- aGCCCCGG---------CCUaACCCCCCUGUgauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 30419 | 0.7 | 0.480624 |
Target: 5'- -gGGGGCCGGGcgugGaGGGuGGGCACg-- -3' miRNA: 3'- agCCCCGGCCUaa--C-CCC-CCUGUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 30797 | 0.67 | 0.626777 |
Target: 5'- gCGGGGCCGucGGUgcccUGGGaGGGAgACa-- -3' miRNA: 3'- aGCCCCGGC--CUA----ACCC-CCCUgUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 32025 | 0.68 | 0.595785 |
Target: 5'- gUGGGGCggaggggUGGGggGGGGGGAgACa-- -3' miRNA: 3'- aGCCCCG-------GCCUaaCCCCCCUgUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 33629 | 0.7 | 0.472322 |
Target: 5'- -gGGGGCCGGAUacccacacgggcgggGGGGGGGuguCGCg-- -3' miRNA: 3'- agCCCCGGCCUAa--------------CCCCCCU---GUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 34289 | 0.68 | 0.561096 |
Target: 5'- -gGGGGCgGGAUgggguuuagcggcgGGGGGcGGCGCg-- -3' miRNA: 3'- agCCCCGgCCUAa-------------CCCCC-CUGUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 34369 | 0.68 | 0.586824 |
Target: 5'- cCGGGGCUGGGUaucccgaggUGGGuGGGugGg--- -3' miRNA: 3'- aGCCCCGGCCUA---------ACCC-CCCugUgauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 34784 | 0.7 | 0.489931 |
Target: 5'- uUCGGGGggGGGggGGGGGGGCGg--- -3' miRNA: 3'- -AGCCCCggCCUaaCCCCCCUGUgauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 36688 | 0.69 | 0.54444 |
Target: 5'- cCGGGGCCcguaagaacagguuGGugaGGGGGGuCGCUGu -3' miRNA: 3'- aGCCCCGG--------------CCuaaCCCCCCuGUGAUu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 37786 | 0.73 | 0.309155 |
Target: 5'- cCGGGGCCGGGgcgcGGGGGucCGCg-- -3' miRNA: 3'- aGCCCCGGCCUaa--CCCCCcuGUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 38811 | 0.7 | 0.480624 |
Target: 5'- gCGGGGacCCGGGcgGGGGuGGAUACg-- -3' miRNA: 3'- aGCCCC--GGCCUaaCCCC-CCUGUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 42321 | 0.68 | 0.586824 |
Target: 5'- gUCGGGGCgGGGggcgUGGGGaaucgcguaGGugGCg-- -3' miRNA: 3'- -AGCCCCGgCCUa---ACCCC---------CCugUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 44733 | 0.66 | 0.725829 |
Target: 5'- cCGGccccGGuuGGAg-GGGGGGGCGCc-- -3' miRNA: 3'- aGCC----CCggCCUaaCCCCCCUGUGauu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 54297 | 0.67 | 0.616765 |
Target: 5'- -gGuGGGCgGGAUagaGGGGGGACcaaACUAu -3' miRNA: 3'- agC-CCCGgCCUAa--CCCCCCUG---UGAUu -5' |
|||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 55075 | 0.66 | 0.686664 |
Target: 5'- gUGGGGCUGGAggGucagagacGGGGGGCGg--- -3' miRNA: 3'- aGCCCCGGCCUaaC--------CCCCCUGUgauu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home