miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 3' -60.3 NC_001806.1 + 2851 0.68 0.596782
Target:  5'- gCGcGGGCgCGGGga-GGGGGGCGCg-- -3'
miRNA:   3'- aGC-CCCG-GCCUaacCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 4398 0.71 0.434583
Target:  5'- cCGGGGCuugggcgcggccuCGGAgagGGGGGGugGCc-- -3'
miRNA:   3'- aGCCCCG-------------GCCUaa-CCCCCCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 6407 0.71 0.39285
Target:  5'- -gGGuGGgCGGAggagGGGGGGACGCg-- -3'
miRNA:   3'- agCC-CCgGCCUaa--CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 6430 0.67 0.626777
Target:  5'- nCGGGGgUGGAggaGGGGGGACn---- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5'
5937 3' -60.3 NC_001806.1 + 6452 0.8 0.114072
Target:  5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 6474 0.7 0.462275
Target:  5'- nCGGGGgCGGAggaGGGGGGACn---- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5'
5937 3' -60.3 NC_001806.1 + 6496 0.8 0.114072
Target:  5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 6518 0.7 0.462275
Target:  5'- nCGGGGgCGGAggaGGGGGGACn---- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5'
5937 3' -60.3 NC_001806.1 + 6540 0.8 0.114072
Target:  5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 10401 0.66 0.735448
Target:  5'- -gGGaGGCgGGAgccGGGGGGuccCGCUGg -3'
miRNA:   3'- agCC-CCGgCCUaa-CCCCCCu--GUGAUu -5'
5937 3' -60.3 NC_001806.1 + 10490 0.66 0.706367
Target:  5'- cUGGGGUCGGGggUGGGGucGGA-ACUGGg -3'
miRNA:   3'- aGCCCCGGCCUa-ACCCC--CCUgUGAUU- -5'
5937 3' -60.3 NC_001806.1 + 10697 0.66 0.716132
Target:  5'- aUGGGGCCGG---GGGGGcGuACGCc-- -3'
miRNA:   3'- aGCCCCGGCCuaaCCCCC-C-UGUGauu -5'
5937 3' -60.3 NC_001806.1 + 11423 0.66 0.735448
Target:  5'- cCGGcGCCGGGauUUGGGGGGGg----- -3'
miRNA:   3'- aGCCcCGGCCU--AACCCCCCUgugauu -5'
5937 3' -60.3 NC_001806.1 + 14379 0.78 0.147023
Target:  5'- -gGGGGCUGGggUGaGGGGACACUGGg -3'
miRNA:   3'- agCCCCGGCCuaACcCCCCUGUGAUU- -5'
5937 3' -60.3 NC_001806.1 + 19100 0.67 0.646805
Target:  5'- cUUGGGGCCgacGGggUGGGGGcccGGgGCUGc -3'
miRNA:   3'- -AGCCCCGG---CCuaACCCCC---CUgUGAUu -5'
5937 3' -60.3 NC_001806.1 + 20711 0.68 0.586824
Target:  5'- uUCGGGGUgGGcccgccGGGGGGGCGg--- -3'
miRNA:   3'- -AGCCCCGgCCuaa---CCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 23944 0.67 0.646805
Target:  5'- gCGGGGCC----UGGGGGGGC-Cg-- -3'
miRNA:   3'- aGCCCCGGccuaACCCCCCUGuGauu -5'
5937 3' -60.3 NC_001806.1 + 25006 0.71 0.435462
Target:  5'- --cGGGCCGGGacgGGGcGGGGCGCUu- -3'
miRNA:   3'- agcCCCGGCCUaa-CCC-CCCUGUGAuu -5'
5937 3' -60.3 NC_001806.1 + 25403 0.67 0.616765
Target:  5'- -aGGGGCgGGAggGGGcgaGGGGCGgUGGu -3'
miRNA:   3'- agCCCCGgCCUaaCCC---CCCUGUgAUU- -5'
5937 3' -60.3 NC_001806.1 + 25539 0.69 0.537628
Target:  5'- cUGGGGCCGGGgaGGGcuGGGGCcggggaggGCUGGg -3'
miRNA:   3'- aGCCCCGGCCUaaCCC--CCCUG--------UGAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.