Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 6540 | 0.8 | 0.114072 |
Target: 5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 6452 | 0.8 | 0.114072 |
Target: 5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 6496 | 0.8 | 0.114072 |
Target: 5'- gCGGGGgCGGAggaGGGGGGACGCg-- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 14379 | 0.78 | 0.147023 |
Target: 5'- -gGGGGCUGGggUGaGGGGACACUGGg -3' miRNA: 3'- agCCCCGGCCuaACcCCCCUGUGAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 55375 | 0.77 | 0.170757 |
Target: 5'- gUCGGGaGCCGGAgcgauugGGGGGGACGg--- -3' miRNA: 3'- -AGCCC-CGGCCUaa-----CCCCCCUGUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 95446 | 0.75 | 0.239762 |
Target: 5'- -aGGGGCCcGAgacgUGGGGGGACAUc-- -3' miRNA: 3'- agCCCCGGcCUa---ACCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 113402 | 0.75 | 0.257293 |
Target: 5'- cCGGGGCCuGGAgcuggGGGuGGGACGCc-- -3' miRNA: 3'- aGCCCCGG-CCUaa---CCC-CCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 55588 | 0.74 | 0.295481 |
Target: 5'- gUCGGGGgUGGAcgUGGGGGGGCu---- -3' miRNA: 3'- -AGCCCCgGCCUa-ACCCCCCUGugauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 37786 | 0.73 | 0.309155 |
Target: 5'- cCGGGGCCGGGgcgcGGGGGucCGCg-- -3' miRNA: 3'- aGCCCCGGCCUaa--CCCCCcuGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 127396 | 0.73 | 0.330562 |
Target: 5'- cCGGGGUUgaggGGGggGGGGGGACGgUGAu -3' miRNA: 3'- aGCCCCGG----CCUaaCCCCCCUGUgAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 151282 | 0.72 | 0.384658 |
Target: 5'- -gGGGGCCGGGgccGGGGGGCGg--- -3' miRNA: 3'- agCCCCGGCCUaacCCCCCUGUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 6407 | 0.71 | 0.39285 |
Target: 5'- -gGGuGGgCGGAggagGGGGGGACGCg-- -3' miRNA: 3'- agCC-CCgGCCUaa--CCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 148159 | 0.71 | 0.421534 |
Target: 5'- -gGGGGCgCGGcggcgccucugcgUGGGGGGGCGCg-- -3' miRNA: 3'- agCCCCG-GCCua-----------ACCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 77136 | 0.71 | 0.426725 |
Target: 5'- cCGGGGCCguGGAggagcucGGGGGGCGCg-- -3' miRNA: 3'- aGCCCCGG--CCUaac----CCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 4398 | 0.71 | 0.434583 |
Target: 5'- cCGGGGCuugggcgcggccuCGGAgagGGGGGGugGCc-- -3' miRNA: 3'- aGCCCCG-------------GCCUaa-CCCCCCugUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 25006 | 0.71 | 0.435462 |
Target: 5'- --cGGGCCGGGacgGGGcGGGGCGCUu- -3' miRNA: 3'- agcCCCGGCCUaa-CCC-CCCUGUGAuu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 25952 | 0.71 | 0.435462 |
Target: 5'- gCGGGGCCgcgGGAgcGGGGGGAggaGCg-- -3' miRNA: 3'- aGCCCCGG---CCUaaCCCCCCUg--UGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 147826 | 0.7 | 0.462275 |
Target: 5'- -gGGGGCCuguggGGAgaggccgGGGGGGAguCGCUGAu -3' miRNA: 3'- agCCCCGG-----CCUaa-----CCCCCCU--GUGAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 6518 | 0.7 | 0.462275 |
Target: 5'- nCGGGGgCGGAggaGGGGGGACn---- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 6474 | 0.7 | 0.462275 |
Target: 5'- nCGGGGgCGGAggaGGGGGGACn---- -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUGugauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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