miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 3' -60.3 NC_001806.1 + 33629 0.7 0.472322
Target:  5'- -gGGGGCCGGAUacccacacgggcgggGGGGGGGuguCGCg-- -3'
miRNA:   3'- agCCCCGGCCUAa--------------CCCCCCU---GUGauu -5'
5937 3' -60.3 NC_001806.1 + 30419 0.7 0.480624
Target:  5'- -gGGGGCCGGGcgugGaGGGuGGGCACg-- -3'
miRNA:   3'- agCCCCGGCCUaa--C-CCC-CCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 38811 0.7 0.480624
Target:  5'- gCGGGGacCCGGGcgGGGGuGGAUACg-- -3'
miRNA:   3'- aGCCCC--GGCCUaaCCCC-CCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 143321 0.7 0.489931
Target:  5'- aUGGuGGUgaGGGgggGGGGGGGCGCUGGu -3'
miRNA:   3'- aGCC-CCGg-CCUaa-CCCCCCUGUGAUU- -5'
5937 3' -60.3 NC_001806.1 + 27830 0.7 0.489931
Target:  5'- -gGGGcGCCGGGUUGGuccccGGGGACGg--- -3'
miRNA:   3'- agCCC-CGGCCUAACC-----CCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 34784 0.7 0.489931
Target:  5'- uUCGGGGggGGGggGGGGGGGCGg--- -3'
miRNA:   3'- -AGCCCCggCCUaaCCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 25619 0.69 0.50689
Target:  5'- cUGGGGCCGGGgagggcuggggcUGGGGaGGGCugggGCUGGg -3'
miRNA:   3'- aGCCCCGGCCUa-----------ACCCC-CCUG----UGAUU- -5'
5937 3' -60.3 NC_001806.1 + 29110 0.69 0.50879
Target:  5'- cUGGGGCCgcagggcguGGA-UGGGGGGGCGg--- -3'
miRNA:   3'- aGCCCCGG---------CCUaACCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 25539 0.69 0.537628
Target:  5'- cUGGGGCCGGGgaGGGcuGGGGCcggggaggGCUGGg -3'
miRNA:   3'- aGCCCCGGCCUaaCCC--CCCUG--------UGAUU- -5'
5937 3' -60.3 NC_001806.1 + 36688 0.69 0.54444
Target:  5'- cCGGGGCCcguaagaacagguuGGugaGGGGGGuCGCUGu -3'
miRNA:   3'- aGCCCCGG--------------CCuaaCCCCCCuGUGAUu -5'
5937 3' -60.3 NC_001806.1 + 124087 0.68 0.557164
Target:  5'- cCGGGGCCcgaagcuucgggGGGUcuGGGGGAUACg-- -3'
miRNA:   3'- aGCCCCGG------------CCUAacCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 34289 0.68 0.561096
Target:  5'- -gGGGGCgGGAUgggguuuagcggcgGGGGGcGGCGCg-- -3'
miRNA:   3'- agCCCCGgCCUAa-------------CCCCC-CUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 147685 0.68 0.56405
Target:  5'- -gGGGGCCGGGgcgcGGGGGcgggccccggaggcGGCGCUc- -3'
miRNA:   3'- agCCCCGGCCUaa--CCCCC--------------CUGUGAuu -5'
5937 3' -60.3 NC_001806.1 + 64662 0.68 0.567009
Target:  5'- -gGGGGCUGccGAauguccugGGGGGGACACg-- -3'
miRNA:   3'- agCCCCGGC--CUaa------CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 111331 0.68 0.576897
Target:  5'- aCGGGGgUGGGgcgGGGGGGGgGgUAu -3'
miRNA:   3'- aGCCCCgGCCUaa-CCCCCCUgUgAUu -5'
5937 3' -60.3 NC_001806.1 + 20711 0.68 0.586824
Target:  5'- uUCGGGGUgGGcccgccGGGGGGGCGg--- -3'
miRNA:   3'- -AGCCCCGgCCuaa---CCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 34369 0.68 0.586824
Target:  5'- cCGGGGCUGGGUaucccgaggUGGGuGGGugGg--- -3'
miRNA:   3'- aGCCCCGGCCUA---------ACCC-CCCugUgauu -5'
5937 3' -60.3 NC_001806.1 + 42321 0.68 0.586824
Target:  5'- gUCGGGGCgGGGggcgUGGGGaaucgcguaGGugGCg-- -3'
miRNA:   3'- -AGCCCCGgCCUa---ACCCC---------CCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 32025 0.68 0.595785
Target:  5'- gUGGGGCggaggggUGGGggGGGGGGAgACa-- -3'
miRNA:   3'- aGCCCCG-------GCCUaaCCCCCCUgUGauu -5'
5937 3' -60.3 NC_001806.1 + 2851 0.68 0.596782
Target:  5'- gCGcGGGCgCGGGga-GGGGGGCGCg-- -3'
miRNA:   3'- aGC-CCCG-GCCUaacCCCCCUGUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.