Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5937 | 3' | -60.3 | NC_001806.1 | + | 55375 | 0.77 | 0.170757 |
Target: 5'- gUCGGGaGCCGGAgcgauugGGGGGGACGg--- -3' miRNA: 3'- -AGCCC-CGGCCUaa-----CCCCCCUGUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 55588 | 0.74 | 0.295481 |
Target: 5'- gUCGGGGgUGGAcgUGGGGGGGCu---- -3' miRNA: 3'- -AGCCCCgGCCUa-ACCCCCCUGugauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 64662 | 0.68 | 0.567009 |
Target: 5'- -gGGGGCUGccGAauguccugGGGGGGACACg-- -3' miRNA: 3'- agCCCCGGC--CUaa------CCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 66227 | 0.67 | 0.646805 |
Target: 5'- gUUGGGGgCGGAgcguugugUGGGcGGGGCguuuGCUAc -3' miRNA: 3'- -AGCCCCgGCCUa-------ACCC-CCCUG----UGAUu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 71079 | 0.67 | 0.666788 |
Target: 5'- -aGGGGCC----UGGGGGGACuACa-- -3' miRNA: 3'- agCCCCGGccuaACCCCCCUG-UGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 77136 | 0.71 | 0.426725 |
Target: 5'- cCGGGGCCguGGAggagcucGGGGGGCGCg-- -3' miRNA: 3'- aGCCCCGG--CCUaac----CCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 77934 | 0.66 | 0.686664 |
Target: 5'- cUGGGcccaGCUGGAaugGGGGGGugACg-- -3' miRNA: 3'- aGCCC----CGGCCUaa-CCCCCCugUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 93706 | 0.66 | 0.686664 |
Target: 5'- -aGGGGuuGGGgggUGGGGGaAC-CUAGg -3' miRNA: 3'- agCCCCggCCUa--ACCCCCcUGuGAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 95446 | 0.75 | 0.239762 |
Target: 5'- -aGGGGCCcGAgacgUGGGGGGACAUc-- -3' miRNA: 3'- agCCCCGGcCUa---ACCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 103434 | 0.66 | 0.725829 |
Target: 5'- -gGGGGUgGGAUga-GGGGGCGCg-- -3' miRNA: 3'- agCCCCGgCCUAaccCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 109232 | 0.67 | 0.626777 |
Target: 5'- gUGGGGCCGGGc-GGGGcGGAaucCUGGg -3' miRNA: 3'- aGCCCCGGCCUaaCCCC-CCUgu-GAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 111331 | 0.68 | 0.576897 |
Target: 5'- aCGGGGgUGGGgcgGGGGGGGgGgUAu -3' miRNA: 3'- aGCCCCgGCCUaa-CCCCCCUgUgAUu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 113402 | 0.75 | 0.257293 |
Target: 5'- cCGGGGCCuGGAgcuggGGGuGGGACGCc-- -3' miRNA: 3'- aGCCCCGG-CCUaa---CCC-CCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 124087 | 0.68 | 0.557164 |
Target: 5'- cCGGGGCCcgaagcuucgggGGGUcuGGGGGAUACg-- -3' miRNA: 3'- aGCCCCGG------------CCUAacCCCCCUGUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 127396 | 0.73 | 0.330562 |
Target: 5'- cCGGGGUUgaggGGGggGGGGGGACGgUGAu -3' miRNA: 3'- aGCCCCGG----CCUaaCCCCCCUGUgAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 134218 | 0.68 | 0.600772 |
Target: 5'- gCGGGGUuauaggccacgcaguCGGAgcGGGGGGGCGg--- -3' miRNA: 3'- aGCCCCG---------------GCCUaaCCCCCCUGUgauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 143242 | 0.67 | 0.616765 |
Target: 5'- cUGGuGGUgCGGGUUGGGGGGGgAUg-- -3' miRNA: 3'- aGCC-CCG-GCCUAACCCCCCUgUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 143321 | 0.7 | 0.489931 |
Target: 5'- aUGGuGGUgaGGGgggGGGGGGGCGCUGGu -3' miRNA: 3'- aGCC-CCGg-CCUaa-CCCCCCUGUGAUU- -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 143805 | 0.67 | 0.636792 |
Target: 5'- -aGGGGaCGGAggGaGGGGGugACg-- -3' miRNA: 3'- agCCCCgGCCUaaC-CCCCCugUGauu -5' |
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5937 | 3' | -60.3 | NC_001806.1 | + | 147370 | 0.66 | 0.716132 |
Target: 5'- cUUGGccccuGCCGGcgcgagGGGGGGACGCg-- -3' miRNA: 3'- -AGCCc----CGGCCuaa---CCCCCCUGUGauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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