miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 73963 0.66 0.766705
Target:  5'- cGC-CGGgccccuCGGCGuaaugcccgcccCGGCCgggGCGGCCCc -3'
miRNA:   3'- -CGaGUCauu---GCCGU------------GCCGG---CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 4276 0.66 0.765788
Target:  5'- aGCUCGacccgccGggGCuGCcCGGCCgugaaGCGGCCCg -3'
miRNA:   3'- -CGAGU-------CauUGcCGuGCCGG-----CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 88930 0.66 0.761188
Target:  5'- --aCGGUGACGGUggGGUugaaccccgccggggCGUGGUCCa -3'
miRNA:   3'- cgaGUCAUUGCCGugCCG---------------GCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 121814 0.66 0.757488
Target:  5'- -gUCGGggGACGGUGCGGC-GCGGacaacaucccCCCg -3'
miRNA:   3'- cgAGUCa-UUGCCGUGCCGgCGCC----------GGG- -5'
5937 5' -59.5 NC_001806.1 + 6222 0.66 0.757488
Target:  5'- -gUCGGagcgGACGGCGuCGGCauCGCGacGCCCc -3'
miRNA:   3'- cgAGUCa---UUGCCGU-GCCG--GCGC--CGGG- -5'
5937 5' -59.5 NC_001806.1 + 116545 0.67 0.748167
Target:  5'- -aUCG----UGGCGCGGCuCGUGGCCa -3'
miRNA:   3'- cgAGUcauuGCCGUGCCG-GCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 75694 0.67 0.748167
Target:  5'- cGCgcccgCAGUAGCcacgagcGCugGGCCGCcgacguggaGGCCg -3'
miRNA:   3'- -CGa----GUCAUUGc------CGugCCGGCG---------CCGGg -5'
5937 5' -59.5 NC_001806.1 + 21615 0.67 0.738749
Target:  5'- -gUC-GUcACGGC-CGGUgGCGGCCa -3'
miRNA:   3'- cgAGuCAuUGCCGuGCCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 38135 0.67 0.738749
Target:  5'- uGCUCGGgggAGCaagACGGUCGCcgGGCCCc -3'
miRNA:   3'- -CGAGUCa--UUGccgUGCCGGCG--CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 109050 0.67 0.738749
Target:  5'- gGCUCAGgcccaacGCGGCcccgauaaACGcCCGCggGGCCCc -3'
miRNA:   3'- -CGAGUCau-----UGCCG--------UGCcGGCG--CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 45270 0.67 0.738749
Target:  5'- uGCUCGucgccuUAGCGGCG-GGagaCGCGGgCCCg -3'
miRNA:   3'- -CGAGUc-----AUUGCCGUgCCg--GCGCC-GGG- -5'
5937 5' -59.5 NC_001806.1 + 50060 0.67 0.737803
Target:  5'- gGCggCAGUucgcgagccucACGGCguugcgucccgucGgGGCCGCGGCCg -3'
miRNA:   3'- -CGa-GUCAu----------UGCCG-------------UgCCGGCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 150902 0.67 0.736855
Target:  5'- cCUCGGgccccaGGCACGGCCcgaugaccgccuCGGCCUc -3'
miRNA:   3'- cGAGUCauug--CCGUGCCGGc-----------GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 134940 0.67 0.733057
Target:  5'- uGCUUgaggauGGUGGCGGCcgaccccucaucguCGGCCgucgcgGCGGCCa -3'
miRNA:   3'- -CGAG------UCAUUGCCGu-------------GCCGG------CGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 93270 0.67 0.730199
Target:  5'- aGCUcCGGggcauuaucuccgagGGCGGgGCGGCCGUcGCCa -3'
miRNA:   3'- -CGA-GUCa--------------UUGCCgUGCCGGCGcCGGg -5'
5937 5' -59.5 NC_001806.1 + 2506 0.67 0.729245
Target:  5'- cGCacgCGGccugGGCGGCGgGGgCG-GGCCCg -3'
miRNA:   3'- -CGa--GUCa---UUGCCGUgCCgGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 67201 0.67 0.729245
Target:  5'- cGCUCGGUcugccggccuGGCGGgGCGcGCUGgUGGgCCa -3'
miRNA:   3'- -CGAGUCA----------UUGCCgUGC-CGGC-GCCgGG- -5'
5937 5' -59.5 NC_001806.1 + 24771 0.67 0.72829
Target:  5'- cGCU-GGUGcugcGCGGCgacgacgACGGCCcgGgGGCCCu -3'
miRNA:   3'- -CGAgUCAU----UGCCG-------UGCCGG--CgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 150677 0.67 0.723504
Target:  5'- cGCcgCGcUGGCGGCcgccgAUGGCCagucccgcccccgagGCGGCCCg -3'
miRNA:   3'- -CGa-GUcAUUGCCG-----UGCCGG---------------CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 108639 0.67 0.719661
Target:  5'- cGCgCGGUGugcguggcuGCGGaCAUGcGcCCGCGGCCa -3'
miRNA:   3'- -CGaGUCAU---------UGCC-GUGC-C-GGCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.