miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 76054 0.66 0.7839
Target:  5'- gGCUucugCGGcUGGCGGgGgGGCUGCuggagcgGGCCCa -3'
miRNA:   3'- -CGA----GUC-AUUGCCgUgCCGGCG-------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 130113 0.66 0.775809
Target:  5'- uGCUCcuUAAucacgUGGUcaguuccuGCGGCCaGUGGCCCg -3'
miRNA:   3'- -CGAGucAUU-----GCCG--------UGCCGG-CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 100770 0.66 0.775809
Target:  5'- aGCUCGGccucGGCGGCcagucGCCGCGcCCCu -3'
miRNA:   3'- -CGAGUCa---UUGCCGugc--CGGCGCcGGG- -5'
5937 5' -59.5 NC_001806.1 + 3855 0.66 0.775809
Target:  5'- aGCcCAGguGgGGCACGGCC-CGcGCCa -3'
miRNA:   3'- -CGaGUCauUgCCGUGCCGGcGC-CGGg -5'
5937 5' -59.5 NC_001806.1 + 132387 0.66 0.775809
Target:  5'- ---gAGUcACGGCACGgguGCUGCuGCCCc -3'
miRNA:   3'- cgagUCAuUGCCGUGC---CGGCGcCGGG- -5'
5937 5' -59.5 NC_001806.1 + 2980 0.66 0.775809
Target:  5'- cCUCcc--GCGGCgcggggagGCGGCgGCGGCCg -3'
miRNA:   3'- cGAGucauUGCCG--------UGCCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 38284 0.66 0.775809
Target:  5'- cGC-CGGgcgAGCGGCGucgaguauCGGCUcCGGUCCg -3'
miRNA:   3'- -CGaGUCa--UUGCCGU--------GCCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 66347 0.66 0.775809
Target:  5'- cGCUCGGU-GCGGUGCaGGCaGCGGggaCUa -3'
miRNA:   3'- -CGAGUCAuUGCCGUG-CCGgCGCCg--GG- -5'
5937 5' -59.5 NC_001806.1 + 22024 0.66 0.775809
Target:  5'- cGCUaucGcGACgGGUACGucagcggggaGCCGUGGCCCg -3'
miRNA:   3'- -CGAgu-CaUUG-CCGUGC----------CGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 69241 0.66 0.766705
Target:  5'- aGCUCGGgGAgcagcccuccgcCGGCgcccagcaGCGGCUGCuGGCUCu -3'
miRNA:   3'- -CGAGUCaUU------------GCCG--------UGCCGGCG-CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 23305 0.66 0.766705
Target:  5'- --cCGGcc-CGGCcCGGCCGCccggaggcggcGGCCCg -3'
miRNA:   3'- cgaGUCauuGCCGuGCCGGCG-----------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 39793 0.66 0.766705
Target:  5'- gGCguagCAGaUAugGGCGUGGuuGCGccaGCCCc -3'
miRNA:   3'- -CGa---GUC-AUugCCGUGCCggCGC---CGGG- -5'
5937 5' -59.5 NC_001806.1 + 70154 0.66 0.766705
Target:  5'- --cCGGccgccCGGgGCGGCCuCGGCCCc -3'
miRNA:   3'- cgaGUCauu--GCCgUGCCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 87722 0.66 0.766705
Target:  5'- cUUCAG-GACGGCuuCGGCCaCGGCg- -3'
miRNA:   3'- cGAGUCaUUGCCGu-GCCGGcGCCGgg -5'
5937 5' -59.5 NC_001806.1 + 126868 0.66 0.766705
Target:  5'- cGC-CuGgagGACGGCGCcggggcucucggGGCCGCaGGaCCCa -3'
miRNA:   3'- -CGaGuCa--UUGCCGUG------------CCGGCG-CC-GGG- -5'
5937 5' -59.5 NC_001806.1 + 138428 0.66 0.766705
Target:  5'- uGCaCAGcaAACaGCAgcUGGUCGUGGCCCg -3'
miRNA:   3'- -CGaGUCa-UUGcCGU--GCCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 46961 0.66 0.766705
Target:  5'- cCUCGGgAACGG-ACGGgguucCCGCuGCCCa -3'
miRNA:   3'- cGAGUCaUUGCCgUGCC-----GGCGcCGGG- -5'
5937 5' -59.5 NC_001806.1 + 52107 0.66 0.766705
Target:  5'- gGCUCcaugcAGUGcAUGGCGCucagGGCgGCGGUCa -3'
miRNA:   3'- -CGAG-----UCAU-UGCCGUG----CCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 95636 0.66 0.766705
Target:  5'- cGCcgCGGUcgccAACGGCuuuGCGGCgCGCGcgcgcuucugcGCCCu -3'
miRNA:   3'- -CGa-GUCA----UUGCCG---UGCCG-GCGC-----------CGGG- -5'
5937 5' -59.5 NC_001806.1 + 31281 0.66 0.766705
Target:  5'- aGCcugCGGUcuCGGCAC--CCGUGGUCCg -3'
miRNA:   3'- -CGa--GUCAuuGCCGUGccGGCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.