miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 119353 0.73 0.398377
Target:  5'- --gCAGcUGACGGCccccgGCGGCgacacgacCGCGGCCCa -3'
miRNA:   3'- cgaGUC-AUUGCCG-----UGCCG--------GCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 24669 0.73 0.398377
Target:  5'- cGCUgGGgcgcgaGGCGGUGCGcGCCGgccCGGCCCg -3'
miRNA:   3'- -CGAgUCa-----UUGCCGUGC-CGGC---GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 89529 0.73 0.40668
Target:  5'- aGCUgCugc-GCGGCGCcccGGCCgGCGGCCCg -3'
miRNA:   3'- -CGA-GucauUGCCGUG---CCGG-CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5595 0.72 0.415092
Target:  5'- cGC-CGGg---GGCccgUGGCCGCGGCCCg -3'
miRNA:   3'- -CGaGUCauugCCGu--GCCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 103789 0.72 0.415092
Target:  5'- uGCUgCAGacccccgGGCGGCGCcGCCGCGGCg- -3'
miRNA:   3'- -CGA-GUCa------UUGCCGUGcCGGCGCCGgg -5'
5937 5' -59.5 NC_001806.1 + 146178 0.72 0.415092
Target:  5'- -aUCGGUGGucaGGCAgcccgGGCCGCGGCUCu -3'
miRNA:   3'- cgAGUCAUUg--CCGUg----CCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 4057 0.72 0.423608
Target:  5'- aGCUCGGgcGCccaCACGGCCGCcggggcGCCCg -3'
miRNA:   3'- -CGAGUCauUGcc-GUGCCGGCGc-----CGGG- -5'
5937 5' -59.5 NC_001806.1 + 137820 0.72 0.423608
Target:  5'- --cCAGUAcGCGGCcCGcCUGCGGCCCg -3'
miRNA:   3'- cgaGUCAU-UGCCGuGCcGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 30412 0.72 0.427044
Target:  5'- gGCUCGGgggGGCcgggcguggagggugGGCACGGgcccucCCGCGGCgCCg -3'
miRNA:   3'- -CGAGUCa--UUG---------------CCGUGCC------GGCGCCG-GG- -5'
5937 5' -59.5 NC_001806.1 + 73462 0.72 0.432229
Target:  5'- ---gGGUGGcCGGCcCGGCCGCcGCCCu -3'
miRNA:   3'- cgagUCAUU-GCCGuGCCGGCGcCGGG- -5'
5937 5' -59.5 NC_001806.1 + 3111 0.72 0.440951
Target:  5'- aGCUCGGca--GGCGCGGgucCCGCGGCa- -3'
miRNA:   3'- -CGAGUCauugCCGUGCC---GGCGCCGgg -5'
5937 5' -59.5 NC_001806.1 + 128048 0.72 0.449772
Target:  5'- uGC-CcGUGGCGGcCACGGCCcccaggugGgGGCCCa -3'
miRNA:   3'- -CGaGuCAUUGCC-GUGCCGG--------CgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 119891 0.72 0.45869
Target:  5'- cGCUgCuGUccuCGGCGCuGGCCaCGGCCCu -3'
miRNA:   3'- -CGA-GuCAuu-GCCGUG-CCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 92336 0.72 0.45869
Target:  5'- cGCcccCAGccUAACGGC-CGGCCaGaCGGCCCc -3'
miRNA:   3'- -CGa--GUC--AUUGCCGuGCCGG-C-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 57016 0.72 0.45869
Target:  5'- cGCcCAGUGccaGGCACuggguGGCCG-GGCCCg -3'
miRNA:   3'- -CGaGUCAUug-CCGUG-----CCGGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 70963 0.72 0.45869
Target:  5'- aGCUCGGccGACcaGCGC-GCCGCGGCCa -3'
miRNA:   3'- -CGAGUCa-UUGc-CGUGcCGGCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 128509 0.72 0.45869
Target:  5'- -aUCAGcguggcguGCGGCAUGGCCauGCGGgCCg -3'
miRNA:   3'- cgAGUCau------UGCCGUGCCGG--CGCCgGG- -5'
5937 5' -59.5 NC_001806.1 + 33421 0.71 0.467701
Target:  5'- cGCgau----CGGCACGGCCGC-GCCCc -3'
miRNA:   3'- -CGagucauuGCCGUGCCGGCGcCGGG- -5'
5937 5' -59.5 NC_001806.1 + 23569 0.71 0.476802
Target:  5'- gGCcCAGccacacGGCGGCgcccGCGGCCGCcGCCCu -3'
miRNA:   3'- -CGaGUCa-----UUGCCG----UGCCGGCGcCGGG- -5'
5937 5' -59.5 NC_001806.1 + 23450 0.71 0.48599
Target:  5'- cGCcCAGcccGCGGCGCcccgGGCCGCcgcggcgcaGGCCCg -3'
miRNA:   3'- -CGaGUCau-UGCCGUG----CCGGCG---------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.