miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 70844 0.82 0.117425
Target:  5'- uGCUaucaAGccGCGGCGCGGCCGCGGgaCCCg -3'
miRNA:   3'- -CGAg---UCauUGCCGUGCCGGCGCC--GGG- -5'
5937 5' -59.5 NC_001806.1 + 91157 0.81 0.136588
Target:  5'- uGUUCgAGggccaGGaCACGGCCGCGGCCCg -3'
miRNA:   3'- -CGAG-UCauug-CC-GUGCCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 116975 0.8 0.143591
Target:  5'- gGUUCGGgugugcaccuuUGACGGCGCGGCCguuguGCGGUCCg -3'
miRNA:   3'- -CGAGUC-----------AUUGCCGUGCCGG-----CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 30204 0.76 0.255774
Target:  5'- cGCgUCGGgacccGCGcgcccccGCGCGGCCGUGGCCCc -3'
miRNA:   3'- -CG-AGUCau---UGC-------CGUGCCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5083 0.76 0.261763
Target:  5'- gGCUCGGgGugGGCgGCGGCCcgucgguGgGGCCCg -3'
miRNA:   3'- -CGAGUCaUugCCG-UGCCGG-------CgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 72390 0.75 0.294088
Target:  5'- gGCUCcu--GCGGacuugACGGCCGCGGCUCu -3'
miRNA:   3'- -CGAGucauUGCCg----UGCCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 33746 0.75 0.30078
Target:  5'- gGCUCugcGGUGuCGGCgGCGGCUGCGGCg- -3'
miRNA:   3'- -CGAG---UCAUuGCCG-UGCCGGCGCCGgg -5'
5937 5' -59.5 NC_001806.1 + 24629 0.74 0.321559
Target:  5'- cGCUgGGgccugGGCGCGccGCUGCGGCCCg -3'
miRNA:   3'- -CGAgUCauug-CCGUGC--CGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 144936 0.74 0.32872
Target:  5'- aCUCGGgguuaccgccAACGGC-CGGCCcccgugGCGGCCCg -3'
miRNA:   3'- cGAGUCa---------UUGCCGuGCCGG------CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 143397 0.74 0.32872
Target:  5'- cGCUCcccggcggccgGGUcGCGGCucuuacgaGCGGCC-CGGCCCg -3'
miRNA:   3'- -CGAG-----------UCAuUGCCG--------UGCCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 1392 0.74 0.350904
Target:  5'- cGC-CAGc-ACGGUGCcGCUGCGGCCCg -3'
miRNA:   3'- -CGaGUCauUGCCGUGcCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5874 0.74 0.350904
Target:  5'- cGC-CGGgaccAACGGgACGGCgGgCGGCCCa -3'
miRNA:   3'- -CGaGUCa---UUGCCgUGCCGgC-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 75253 0.74 0.357763
Target:  5'- --gCGGUGACGGCccugggcGCGGCCGCcagcgacccGGCCUc -3'
miRNA:   3'- cgaGUCAUUGCCG-------UGCCGGCG---------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 88656 0.73 0.366273
Target:  5'- cGCcCGGggacuCGcGCAgGGCCGCGGCCa -3'
miRNA:   3'- -CGaGUCauu--GC-CGUgCCGGCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 43290 0.73 0.37413
Target:  5'- cCUCGGaGGCGGagcCGCGGCUGCaggaGGCCCu -3'
miRNA:   3'- cGAGUCaUUGCC---GUGCCGGCG----CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 146834 0.73 0.37413
Target:  5'- aGCagGGUGcgGCGGCuccagcCGGggaCCGCGGCCCg -3'
miRNA:   3'- -CGagUCAU--UGCCGu-----GCC---GGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 1513 0.73 0.379698
Target:  5'- gGCUcCAGc-AgGGCGCGGgcgcaaaagucccuCCGCGGCCCg -3'
miRNA:   3'- -CGA-GUCauUgCCGUGCC--------------GGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 30632 0.73 0.382101
Target:  5'- aCUCAGggccggGGgGGCGCGGCCaggGUGGgCCCg -3'
miRNA:   3'- cGAGUCa-----UUgCCGUGCCGG---CGCC-GGG- -5'
5937 5' -59.5 NC_001806.1 + 151443 0.73 0.382101
Target:  5'- gGCggggggCGGcGGCGGgGCGGCCGCGGgCg -3'
miRNA:   3'- -CGa-----GUCaUUGCCgUGCCGGCGCCgGg -5'
5937 5' -59.5 NC_001806.1 + 93444 0.73 0.390184
Target:  5'- aGCgCGGcAACGGCgaguggucgACGGaCGCGGCCCu -3'
miRNA:   3'- -CGaGUCaUUGCCG---------UGCCgGCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.