miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 1392 0.74 0.350904
Target:  5'- cGC-CAGc-ACGGUGCcGCUGCGGCCCg -3'
miRNA:   3'- -CGaGUCauUGCCGUGcCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 1425 0.67 0.700291
Target:  5'- gGCcCAGcgaaucccgGGCGGCGcCGGCgGCagGGCCCc -3'
miRNA:   3'- -CGaGUCa--------UUGCCGU-GCCGgCG--CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 1513 0.73 0.379698
Target:  5'- gGCUcCAGc-AgGGCGCGGgcgcaaaagucccuCCGCGGCCCg -3'
miRNA:   3'- -CGA-GUCauUgCCGUGCC--------------GGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 1807 0.68 0.680705
Target:  5'- cGCacgCGGUAGC-GCACGuugccGCCGCGGCa- -3'
miRNA:   3'- -CGa--GUCAUUGcCGUGC-----CGGCGCCGgg -5'
5937 5' -59.5 NC_001806.1 + 1854 0.68 0.660969
Target:  5'- cGCgUCGGgguACaGGCGCGcGUgCGCGGCCUc -3'
miRNA:   3'- -CG-AGUCau-UG-CCGUGC-CG-GCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 2432 0.66 0.801499
Target:  5'- gGCgcgCAGgg--GGCcaaagagGCGGCCcccgGCGGCCCc -3'
miRNA:   3'- -CGa--GUCauugCCG-------UGCCGG----CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 2506 0.67 0.729245
Target:  5'- cGCacgCGGccugGGCGGCGgGGgCG-GGCCCg -3'
miRNA:   3'- -CGa--GUCa---UUGCCGUgCCgGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 2625 0.71 0.494331
Target:  5'- aGCUCGGccACGGCGCgcggggagcaguaGGCCuccagggcgGCGGCCg -3'
miRNA:   3'- -CGAGUCauUGCCGUG-------------CCGG---------CGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 2767 0.66 0.784793
Target:  5'- gGCgCGGgcgGGCcuGCGCcGCgGCGGCCCg -3'
miRNA:   3'- -CGaGUCa--UUGc-CGUGcCGgCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 2980 0.66 0.775809
Target:  5'- cCUCcc--GCGGCgcggggagGCGGCgGCGGCCg -3'
miRNA:   3'- cGAGucauUGCCG--------UGCCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 3066 0.66 0.793647
Target:  5'- gGCUCuGGUugucaaacAGCaGGUccgcgGCGGCgGCGGCCg -3'
miRNA:   3'- -CGAG-UCA--------UUG-CCG-----UGCCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 3111 0.72 0.440951
Target:  5'- aGCUCGGca--GGCGCGGgucCCGCGGCa- -3'
miRNA:   3'- -CGAGUCauugCCGUGCC---GGCGCCGgg -5'
5937 5' -59.5 NC_001806.1 + 3165 0.7 0.552408
Target:  5'- gGCUCAc-GGCGcGCACGGCggccacgGCGGCCUc -3'
miRNA:   3'- -CGAGUcaUUGC-CGUGCCGg------CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 3301 0.7 0.562141
Target:  5'- gGCgugCGGcGGCGGCGgGGaagCGgGGCCCg -3'
miRNA:   3'- -CGa--GUCaUUGCCGUgCCg--GCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 3435 0.68 0.670852
Target:  5'- cGCggCAG--GCGGCcaggcacucgACGGCCacGCGGCCg -3'
miRNA:   3'- -CGa-GUCauUGCCG----------UGCCGG--CGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 3624 0.7 0.562141
Target:  5'- cGCcCGGUGcggcgGCGGCgACGGCgGCGaCCCc -3'
miRNA:   3'- -CGaGUCAU-----UGCCG-UGCCGgCGCcGGG- -5'
5937 5' -59.5 NC_001806.1 + 3770 0.69 0.591593
Target:  5'- uGCgcgCGGUcguaucGGCGGCucauggccacgGCGGCCGCcgcgugcgccaGGCCCc -3'
miRNA:   3'- -CGa--GUCA------UUGCCG-----------UGCCGGCG-----------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 3855 0.66 0.775809
Target:  5'- aGCcCAGguGgGGCACGGCC-CGcGCCa -3'
miRNA:   3'- -CGaGUCauUgCCGUGCCGGcGC-CGGg -5'
5937 5' -59.5 NC_001806.1 + 4057 0.72 0.423608
Target:  5'- aGCUCGGgcGCccaCACGGCCGCcggggcGCCCg -3'
miRNA:   3'- -CGAGUCauUGcc-GUGCCGGCGc-----CGGG- -5'
5937 5' -59.5 NC_001806.1 + 4276 0.66 0.765788
Target:  5'- aGCUCGacccgccGggGCuGCcCGGCCgugaaGCGGCCCg -3'
miRNA:   3'- -CGAGU-------CauUGcCGuGCCGG-----CGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.