miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 4338 0.68 0.680705
Target:  5'- cGCgCGGgcccGGCGGCGCucgaUGCGGCCCg -3'
miRNA:   3'- -CGaGUCa---UUGCCGUGccg-GCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 4395 0.69 0.590607
Target:  5'- cGCcCGGggcuugGGCGCGGCCucggagaggggggGUGGCCCg -3'
miRNA:   3'- -CGaGUCauug--CCGUGCCGG-------------CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 4663 0.7 0.571921
Target:  5'- gGCUgGGccGGCgGGCGCGGCgacagGCGGUCCg -3'
miRNA:   3'- -CGAgUCa-UUG-CCGUGCCGg----CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 4727 0.68 0.651064
Target:  5'- cCUCccGUucGCGGCcccgGGCCGgGGCCCg -3'
miRNA:   3'- cGAGu-CAu-UGCCGug--CCGGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5083 0.76 0.261763
Target:  5'- gGCUCGGgGugGGCgGCGGCCcgucgguGgGGCCCg -3'
miRNA:   3'- -CGAGUCaUugCCG-UGCCGG-------CgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5506 0.66 0.802365
Target:  5'- ---gAGcAGCGGa--GGCCGcCGGCCCc -3'
miRNA:   3'- cgagUCaUUGCCgugCCGGC-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5595 0.72 0.415092
Target:  5'- cGC-CGGg---GGCccgUGGCCGCGGCCCg -3'
miRNA:   3'- -CGaGUCauugCCGu--GCCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 5874 0.74 0.350904
Target:  5'- cGC-CGGgaccAACGGgACGGCgGgCGGCCCa -3'
miRNA:   3'- -CGaGUCa---UUGCCgUGCCGgC-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 6222 0.66 0.757488
Target:  5'- -gUCGGagcgGACGGCGuCGGCauCGCGacGCCCc -3'
miRNA:   3'- cgAGUCa---UUGCCGU-GCCG--GCGC--CGGG- -5'
5937 5' -59.5 NC_001806.1 + 15158 0.67 0.710008
Target:  5'- cCUCAGccAACGGgAaGGCUG-GGCCCg -3'
miRNA:   3'- cGAGUCa-UUGCCgUgCCGGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 20337 0.68 0.660969
Target:  5'- ---gGGggGCGGCAaGGCgGgCGGCCCu -3'
miRNA:   3'- cgagUCauUGCCGUgCCGgC-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 20709 0.68 0.674798
Target:  5'- cGUUCGGgGugGGCccgccgggggggcggGgGGCCgGCGGCCUc -3'
miRNA:   3'- -CGAGUCaUugCCG---------------UgCCGG-CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 21615 0.67 0.738749
Target:  5'- -gUC-GUcACGGC-CGGUgGCGGCCa -3'
miRNA:   3'- cgAGuCAuUGCCGuGCCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 21914 0.68 0.690521
Target:  5'- cGC-CGGgcccgcGCGGCGguggcCGGCCGCgacgccacgGGCCCu -3'
miRNA:   3'- -CGaGUCau----UGCCGU-----GCCGGCG---------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 22024 0.66 0.775809
Target:  5'- cGCUaucGcGACgGGUACGucagcggggaGCCGUGGCCCg -3'
miRNA:   3'- -CGAgu-CaUUG-CCGUGC----------CGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 22413 0.69 0.601475
Target:  5'- cGC-CA-UGGCGGC-CGGCCGCuucggcuggGGCCUg -3'
miRNA:   3'- -CGaGUcAUUGCCGuGCCGGCG---------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 22855 0.68 0.664925
Target:  5'- gGCUUc--GACGGCgaccugGCGGCCGUcccggggcuggccggGGCCCg -3'
miRNA:   3'- -CGAGucaUUGCCG------UGCCGGCG---------------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 22978 0.67 0.710008
Target:  5'- uGCgCGcGUGGCuGCGCGaGCUGCGGUUCg -3'
miRNA:   3'- -CGaGU-CAUUGcCGUGC-CGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 23305 0.66 0.766705
Target:  5'- --cCGGcc-CGGCcCGGCCGCccggaggcggcGGCCCg -3'
miRNA:   3'- cgaGUCauuGCCGuGCCGGCG-----------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 23450 0.71 0.48599
Target:  5'- cGCcCAGcccGCGGCGCcccgGGCCGCcgcggcgcaGGCCCg -3'
miRNA:   3'- -CGaGUCau-UGCCGUG----CCGGCG---------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.