miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 151562 0.67 0.710008
Target:  5'- gGCggCGGgggccgcGAUGGCgGCGGCgGCGGgCCa -3'
miRNA:   3'- -CGa-GUCa------UUGCCG-UGCCGgCGCCgGG- -5'
5937 5' -59.5 NC_001806.1 + 151522 0.68 0.670852
Target:  5'- uGUgCGGUuggGACGGCGCccgugGGCCcggGCGGCCg -3'
miRNA:   3'- -CGaGUCA---UUGCCGUG-----CCGG---CGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 151443 0.73 0.382101
Target:  5'- gGCggggggCGGcGGCGGgGCGGCCGCGGgCg -3'
miRNA:   3'- -CGa-----GUCaUUGCCgUGCCGGCGCCgGg -5'
5937 5' -59.5 NC_001806.1 + 151002 0.71 0.504613
Target:  5'- cGC-CAG--GCGG-GCGGCCGaGGCCCa -3'
miRNA:   3'- -CGaGUCauUGCCgUGCCGGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 150902 0.67 0.736855
Target:  5'- cCUCGGgccccaGGCACGGCCcgaugaccgccuCGGCCUc -3'
miRNA:   3'- cGAGUCauug--CCGUGCCGGc-----------GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 150677 0.67 0.723504
Target:  5'- cGCcgCGcUGGCGGCcgccgAUGGCCagucccgcccccgagGCGGCCCg -3'
miRNA:   3'- -CGa-GUcAUUGCCG-----UGCCGG---------------CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 150649 0.67 0.719661
Target:  5'- aCUCGGcgGACGcuGguUGGCCG-GGCCCc -3'
miRNA:   3'- cGAGUCa-UUGC--CguGCCGGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 150485 0.69 0.611377
Target:  5'- uGC-CGGaAGCGGgaaggGCGGCCGgGGCCg -3'
miRNA:   3'- -CGaGUCaUUGCCg----UGCCGGCgCCGGg -5'
5937 5' -59.5 NC_001806.1 + 150155 0.7 0.552408
Target:  5'- -aUCAuUAGCauGCACGGCC-CGGCCCc -3'
miRNA:   3'- cgAGUcAUUGc-CGUGCCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 150053 0.68 0.680705
Target:  5'- gGCggCAGUGACGauucccccaAUGGCCGCGcGUCCc -3'
miRNA:   3'- -CGa-GUCAUUGCcg-------UGCCGGCGC-CGGG- -5'
5937 5' -59.5 NC_001806.1 + 147744 0.68 0.680705
Target:  5'- cGCgCGGggGCGcGCgggucccgacGCGGCCGCggacgcggggGGCCCg -3'
miRNA:   3'- -CGaGUCauUGC-CG----------UGCCGGCG----------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 146834 0.73 0.37413
Target:  5'- aGCagGGUGcgGCGGCuccagcCGGggaCCGCGGCCCg -3'
miRNA:   3'- -CGagUCAU--UGCCGu-----GCC---GGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 146178 0.72 0.415092
Target:  5'- -aUCGGUGGucaGGCAgcccgGGCCGCGGCUCu -3'
miRNA:   3'- cgAGUCAUUg--CCGUg----CCGGCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 144936 0.74 0.32872
Target:  5'- aCUCGGgguuaccgccAACGGC-CGGCCcccgugGCGGCCCg -3'
miRNA:   3'- cGAGUCa---------UUGCCGuGCCGG------CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 143539 0.71 0.504613
Target:  5'- gGCcCGGcc-CGGCcCGGCC-CGGCCCg -3'
miRNA:   3'- -CGaGUCauuGCCGuGCCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 143397 0.74 0.32872
Target:  5'- cGCUCcccggcggccgGGUcGCGGCucuuacgaGCGGCC-CGGCCCg -3'
miRNA:   3'- -CGAG-----------UCAuUGCCG--------UGCCGGcGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 142200 0.68 0.651064
Target:  5'- gGCgUGGUGAgGgGCuuCGGCUGCaGGCCCg -3'
miRNA:   3'- -CGaGUCAUUgC-CGu-GCCGGCG-CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 142017 0.7 0.571921
Target:  5'- cCUCuagGGCGGCGaggaGcGCCGcCGGCCCu -3'
miRNA:   3'- cGAGucaUUGCCGUg---C-CGGC-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 141418 0.71 0.514039
Target:  5'- --cCAGgc-CGGgGCGGCgCGCGGCCa -3'
miRNA:   3'- cgaGUCauuGCCgUGCCG-GCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 140537 0.67 0.719661
Target:  5'- --aCGGgGACGGCGgGGCagaGCcGCCCg -3'
miRNA:   3'- cgaGUCaUUGCCGUgCCGg--CGcCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.