miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5942 3' -49.7 NC_001806.1 + 91907 0.66 0.997701
Target:  5'- ----cACGGcCAUGggGcGGCUGGAGa -3'
miRNA:   3'- gcaacUGCUuGUACuuC-CCGACCUUg -5'
5942 3' -49.7 NC_001806.1 + 95423 0.66 0.996759
Target:  5'- cCGUcGccGCGGGCccGggGGGCaGGGGCc -3'
miRNA:   3'- -GCAaC--UGCUUGuaCuuCCCGaCCUUG- -5'
5942 3' -49.7 NC_001806.1 + 6540 0.66 0.996759
Target:  5'- gCGggGGCGGAgGaGggGGGaCgcgGGGGCg -3'
miRNA:   3'- -GCaaCUGCUUgUaCuuCCC-Ga--CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 6496 0.66 0.996759
Target:  5'- gCGggGGCGGAgGaGggGGGaCgcgGGGGCg -3'
miRNA:   3'- -GCaaCUGCUUgUaCuuCCC-Ga--CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 6452 0.66 0.996759
Target:  5'- gCGggGGCGGAgGaGggGGGaCgcgGGGGCg -3'
miRNA:   3'- -GCaaCUGCUUgUaCuuCCC-Ga--CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 14378 0.67 0.995518
Target:  5'- aGggGGCuGGgGUGAGGGGacaCUGGGGCg -3'
miRNA:   3'- gCaaCUGcUUgUACUUCCC---GACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 6667 0.67 0.994766
Target:  5'- uCGggGGgGAGCAUGucguGGGCccUGGAAa -3'
miRNA:   3'- -GCaaCUgCUUGUACuu--CCCG--ACCUUg -5'
5942 3' -49.7 NC_001806.1 + 12103 0.67 0.993915
Target:  5'- ---gGugGGAUAUGcGGGGCUGuGAGu -3'
miRNA:   3'- gcaaCugCUUGUACuUCCCGAC-CUUg -5'
5942 3' -49.7 NC_001806.1 + 147769 0.67 0.993915
Target:  5'- gCGgccGCGGACGcGggGGGCccGGGGCg -3'
miRNA:   3'- -GCaacUGCUUGUaCuuCCCGa-CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 92007 0.67 0.993915
Target:  5'- --cUGAUGcGCAaccuggUGGAGGGgaGGAACu -3'
miRNA:   3'- gcaACUGCuUGU------ACUUCCCgaCCUUG- -5'
5942 3' -49.7 NC_001806.1 + 62226 0.67 0.993915
Target:  5'- cCGUaagGGCcgucaGAGCGgggGAgAGGGCUGGGGCc -3'
miRNA:   3'- -GCAa--CUG-----CUUGUa--CU-UCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 140525 0.67 0.992956
Target:  5'- uCGUgGACGAACAcGggGacGGC-GGGGCa -3'
miRNA:   3'- -GCAaCUGCUUGUaCuuC--CCGaCCUUG- -5'
5942 3' -49.7 NC_001806.1 + 24937 0.68 0.990678
Target:  5'- aGUUGugGAcug-GGAGGcGCcUGGGACg -3'
miRNA:   3'- gCAACugCUuguaCUUCC-CG-ACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 99644 0.68 0.9877
Target:  5'- gCGgUGGCGGGCcUGgcGGGCaggcagcUGGGGCa -3'
miRNA:   3'- -GCaACUGCUUGuACuuCCCG-------ACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 63856 0.68 0.986219
Target:  5'- ---gGGCGGGCAUGAcgcugcggucccGGGGCcGGAGu -3'
miRNA:   3'- gcaaCUGCUUGUACU------------UCCCGaCCUUg -5'
5942 3' -49.7 NC_001806.1 + 93689 0.69 0.982441
Target:  5'- aCGUUGGauauGCuGUGAGGGGUUGGGGg -3'
miRNA:   3'- -GCAACUgcu-UG-UACUUCCCGACCUUg -5'
5942 3' -49.7 NC_001806.1 + 40848 0.69 0.975381
Target:  5'- cCGUgGACG-ACGUacGGGGCgGGGACg -3'
miRNA:   3'- -GCAaCUGCuUGUAcuUCCCGaCCUUG- -5'
5942 3' -49.7 NC_001806.1 + 30418 0.69 0.975381
Target:  5'- gGggGGCcGGGCGUGGAGGGUgGGcACg -3'
miRNA:   3'- gCaaCUG-CUUGUACUUCCCGaCCuUG- -5'
5942 3' -49.7 NC_001806.1 + 25577 0.69 0.972621
Target:  5'- cCGggGAgGGcugggGCcggGGAGGGCUGGGGCc -3'
miRNA:   3'- -GCaaCUgCU-----UGua-CUUCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 25545 0.69 0.972621
Target:  5'- cCGggGAgGGcugggGCcggGGAGGGCUGGGGCc -3'
miRNA:   3'- -GCaaCUgCU-----UGua-CUUCCCGACCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.