Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5942 | 5' | -56.7 | NC_001806.1 | + | 132095 | 0.76 | 0.348909 |
Target: 5'- -cGCGCC-GCUCUCCuGGUCGCGGa- -3' miRNA: 3'- acUGCGGuCGAGAGGuCCAGCGUUgu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 126879 | 0.76 | 0.356772 |
Target: 5'- cGGCGCCggGGCUCUCgGGGcCGCAGg- -3' miRNA: 3'- aCUGCGG--UCGAGAGgUCCaGCGUUgu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 102409 | 0.75 | 0.36476 |
Target: 5'- cGACGCCAGCgCUCCGuGuUCGUAGCGg -3' miRNA: 3'- aCUGCGGUCGaGAGGUcC-AGCGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 33740 | 0.75 | 0.389454 |
Target: 5'- -cGCGCCGGCUCUgCGGuGUCgGCGGCGg -3' miRNA: 3'- acUGCGGUCGAGAgGUC-CAG-CGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 103135 | 0.71 | 0.577885 |
Target: 5'- aUGGCGgC-GUUCUCCAGGgcaGCGGCAg -3' miRNA: 3'- -ACUGCgGuCGAGAGGUCCag-CGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 143385 | 0.7 | 0.628031 |
Target: 5'- cGACGgcgacaacgcuccCCGGCgg-CCGGGUCGCGGCu -3' miRNA: 3'- aCUGC-------------GGUCGagaGGUCCAGCGUUGu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 3415 | 0.7 | 0.63933 |
Target: 5'- ---gGCCAGCgcCUCCAGGauccCGCGGCAg -3' miRNA: 3'- acugCGGUCGa-GAGGUCCa---GCGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 21319 | 0.7 | 0.645492 |
Target: 5'- cGACGCCGGCgaggacgCCGGGgacgccgucucgcCGCGACAg -3' miRNA: 3'- aCUGCGGUCGaga----GGUCCa------------GCGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 100807 | 0.7 | 0.65985 |
Target: 5'- aGACGCCGGCga--CAGGUgGCGAa- -3' miRNA: 3'- aCUGCGGUCGagagGUCCAgCGUUgu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 123096 | 0.7 | 0.661898 |
Target: 5'- gGACGCCAGCUgcugaccaaacaUCgcgcacaccggguggCGGGUCGCGGCGg -3' miRNA: 3'- aCUGCGGUCGAg-----------AG---------------GUCCAGCGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 4887 | 0.7 | 0.680279 |
Target: 5'- gGAgGCCAGCagagCCAGcuGUCGCGGCGa -3' miRNA: 3'- aCUgCGGUCGaga-GGUC--CAGCGUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 57679 | 0.69 | 0.68841 |
Target: 5'- aGGCGCCGGggcuugcUUCUCCggucgggAGGUCGCGAa- -3' miRNA: 3'- aCUGCGGUC-------GAGAGG-------UCCAGCGUUgu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 37236 | 0.69 | 0.720586 |
Target: 5'- aGACGCCgccgcgaacacAGUUCgUCCAGGcCGC-ACAg -3' miRNA: 3'- aCUGCGG-----------UCGAG-AGGUCCaGCGuUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 134524 | 0.69 | 0.720586 |
Target: 5'- gUGGCGUggcuucgggggCAGUUCUCCAGGUacauCAGCAg -3' miRNA: 3'- -ACUGCG-----------GUCGAGAGGUCCAgc--GUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 119527 | 0.68 | 0.740318 |
Target: 5'- gGGCGCCcuGGUUCaCCAGGcCGuCAGCGg -3' miRNA: 3'- aCUGCGG--UCGAGaGGUCCaGC-GUUGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 88079 | 0.68 | 0.744221 |
Target: 5'- cUGGcCGCCAGCUCgUUCaggugggauucggggAGGUCGCAGgAa -3' miRNA: 3'- -ACU-GCGGUCGAG-AGG---------------UCCAGCGUUgU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 144576 | 0.68 | 0.769179 |
Target: 5'- gGGCGCguccgggugccgCGGCUCUCCGGGccccccUGCAGCc -3' miRNA: 3'- aCUGCG------------GUCGAGAGGUCCa-----GCGUUGu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 100016 | 0.68 | 0.778566 |
Target: 5'- -cGCGuCCGGUUCgUCCuGGUCGCAGu- -3' miRNA: 3'- acUGC-GGUCGAG-AGGuCCAGCGUUgu -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 6247 | 0.68 | 0.778566 |
Target: 5'- cGACGCCccGGCUCgggaUCGGGaUCGCAuCGg -3' miRNA: 3'- aCUGCGG--UCGAGa---GGUCC-AGCGUuGU- -5' |
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5942 | 5' | -56.7 | NC_001806.1 | + | 82923 | 0.68 | 0.78782 |
Target: 5'- -cGCGuCUAGaCUCUCCAGGgucugggacCGCAGCGc -3' miRNA: 3'- acUGC-GGUC-GAGAGGUCCa--------GCGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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