miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5942 5' -56.7 NC_001806.1 + 3415 0.7 0.63933
Target:  5'- ---gGCCAGCgcCUCCAGGauccCGCGGCAg -3'
miRNA:   3'- acugCGGUCGa-GAGGUCCa---GCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 4887 0.7 0.680279
Target:  5'- gGAgGCCAGCagagCCAGcuGUCGCGGCGa -3'
miRNA:   3'- aCUgCGGUCGaga-GGUC--CAGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 5584 0.68 0.78782
Target:  5'- cGACGCCGGCacgCCGGGggccCGUGGCc -3'
miRNA:   3'- aCUGCGGUCGagaGGUCCa---GCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 6247 0.68 0.778566
Target:  5'- cGACGCCccGGCUCgggaUCGGGaUCGCAuCGg -3'
miRNA:   3'- aCUGCGG--UCGAGa---GGUCC-AGCGUuGU- -5'
5942 5' -56.7 NC_001806.1 + 21319 0.7 0.645492
Target:  5'- cGACGCCGGCgaggacgCCGGGgacgccgucucgcCGCGACAg -3'
miRNA:   3'- aCUGCGGUCGaga----GGUCCa------------GCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 22156 0.66 0.878491
Target:  5'- cGACGCCGGUUCgaggCCucGGG-CGCcccGGCGg -3'
miRNA:   3'- aCUGCGGUCGAGa---GG--UCCaGCG---UUGU- -5'
5942 5' -56.7 NC_001806.1 + 33740 0.75 0.389454
Target:  5'- -cGCGCCGGCUCUgCGGuGUCgGCGGCGg -3'
miRNA:   3'- acUGCGGUCGAGAgGUC-CAG-CGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 37236 0.69 0.720586
Target:  5'- aGACGCCgccgcgaacacAGUUCgUCCAGGcCGC-ACAg -3'
miRNA:   3'- aCUGCGG-----------UCGAG-AGGUCCaGCGuUGU- -5'
5942 5' -56.7 NC_001806.1 + 44310 0.67 0.82334
Target:  5'- uUGGCGCCGGC-CUCgaGGGUCaCAGgAa -3'
miRNA:   3'- -ACUGCGGUCGaGAGg-UCCAGcGUUgU- -5'
5942 5' -56.7 NC_001806.1 + 54080 0.66 0.848173
Target:  5'- cGACGCCAa--C-CCAGGcCGCGGCGg -3'
miRNA:   3'- aCUGCGGUcgaGaGGUCCaGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 57679 0.69 0.68841
Target:  5'- aGGCGCCGGggcuugcUUCUCCggucgggAGGUCGCGAa- -3'
miRNA:   3'- aCUGCGGUC-------GAGAGG-------UCCAGCGUUgu -5'
5942 5' -56.7 NC_001806.1 + 60651 0.67 0.805897
Target:  5'- --cCGCCcgAGCUCgUCCAGGUcccgaacgCGCAGCu -3'
miRNA:   3'- acuGCGG--UCGAG-AGGUCCA--------GCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 74138 0.66 0.848173
Target:  5'- -aGCGCCaaGGCUCUaCAGGccaGCGACAa -3'
miRNA:   3'- acUGCGG--UCGAGAgGUCCag-CGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 82923 0.68 0.78782
Target:  5'- -cGCGuCUAGaCUCUCCAGGgucugggacCGCAGCGc -3'
miRNA:   3'- acUGC-GGUC-GAGAGGUCCa--------GCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 86285 0.67 0.82334
Target:  5'- gGAUGUCc-CUCUCCGGGUCGguGa- -3'
miRNA:   3'- aCUGCGGucGAGAGGUCCAGCguUgu -5'
5942 5' -56.7 NC_001806.1 + 88079 0.68 0.744221
Target:  5'- cUGGcCGCCAGCUCgUUCaggugggauucggggAGGUCGCAGgAa -3'
miRNA:   3'- -ACU-GCGGUCGAG-AGG---------------UCCAGCGUUgU- -5'
5942 5' -56.7 NC_001806.1 + 92962 0.66 0.856064
Target:  5'- gGACGCCGuggacGCgcaUCCGGG-CGCGugGa -3'
miRNA:   3'- aCUGCGGU-----CGag-AGGUCCaGCGUugU- -5'
5942 5' -56.7 NC_001806.1 + 96450 0.67 0.81383
Target:  5'- gUGGCGUCGGCggcuccgagUUCCcccggcacgccugGGGUCGCGGCc -3'
miRNA:   3'- -ACUGCGGUCGa--------GAGG-------------UCCAGCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 100016 0.68 0.778566
Target:  5'- -cGCGuCCGGUUCgUCCuGGUCGCAGu- -3'
miRNA:   3'- acUGC-GGUCGAG-AGGuCCAGCGUUgu -5'
5942 5' -56.7 NC_001806.1 + 100807 0.7 0.65985
Target:  5'- aGACGCCGGCga--CAGGUgGCGAa- -3'
miRNA:   3'- aCUGCGGUCGagagGUCCAgCGUUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.