miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 79391 0.68 0.748606
Target:  5'- uGACGAcuccGGCGGcCCcgCGCCCCUCcuuGCc -3'
miRNA:   3'- -CUGCU----UUGCCuGGa-GCGGGGAGac-CG- -5'
5944 5' -57.4 NC_001806.1 + 77269 0.68 0.748606
Target:  5'- cGACGcgguGGCcggGGACCUgGCCCCaugGGCg -3'
miRNA:   3'- -CUGCu---UUG---CCUGGAgCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 89792 0.68 0.739048
Target:  5'- gGGCuGggGCGGACCggcaCGCCCC-CaGGa -3'
miRNA:   3'- -CUG-CuuUGCCUGGa---GCGGGGaGaCCg -5'
5944 5' -57.4 NC_001806.1 + 87254 0.68 0.739048
Target:  5'- aGugGGGucaaGGAcCCUgGCCCC-CUGGUa -3'
miRNA:   3'- -CugCUUug--CCU-GGAgCGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 75280 0.68 0.739048
Target:  5'- aGCGAccCGG-CCUC-CCCC-CUGGCc -3'
miRNA:   3'- cUGCUuuGCCuGGAGcGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 22665 0.69 0.71967
Target:  5'- cGGCGccGCGGGgauCCUCGCCgCC-CUGGg -3'
miRNA:   3'- -CUGCuuUGCCU---GGAGCGG-GGaGACCg -5'
5944 5' -57.4 NC_001806.1 + 150713 0.69 0.71967
Target:  5'- -cCGAGGCGG-CC-CGCCCUgugagggcgggCUGGCu -3'
miRNA:   3'- cuGCUUUGCCuGGaGCGGGGa----------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 57757 0.69 0.71967
Target:  5'- cGGCGGGACGGGCCgcCGUCCCgUCcgccGCa -3'
miRNA:   3'- -CUGCUUUGCCUGGa-GCGGGG-AGac--CG- -5'
5944 5' -57.4 NC_001806.1 + 123217 0.69 0.710851
Target:  5'- uGGCGGAAUGGACCgagaugccgcccacgCGgCCCUgcgccgacgcCUGGCc -3'
miRNA:   3'- -CUGCUUUGCCUGGa--------------GCgGGGA----------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 72869 0.69 0.709867
Target:  5'- --gGAGAUGGGCgUCGUCCCggUUGGUc -3'
miRNA:   3'- cugCUUUGCCUGgAGCGGGGa-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 53631 0.69 0.709867
Target:  5'- aGACGAGACaGACCgcaguacaCGCgCCUCacGGCa -3'
miRNA:   3'- -CUGCUUUGcCUGGa-------GCGgGGAGa-CCG- -5'
5944 5' -57.4 NC_001806.1 + 33120 0.69 0.703954
Target:  5'- gGACGggGCccGGACCgccgcggucggggGCCCCUCgucccgGGCc -3'
miRNA:   3'- -CUGCuuUG--CCUGGag-----------CGGGGAGa-----CCG- -5'
5944 5' -57.4 NC_001806.1 + 86046 0.7 0.68011
Target:  5'- gGGgGggGCGGG-CUCGuCCCCUggGGCg -3'
miRNA:   3'- -CUgCuuUGCCUgGAGC-GGGGAgaCCG- -5'
5944 5' -57.4 NC_001806.1 + 90842 0.7 0.670103
Target:  5'- aGGCGGucGugGGACC-CGCCgCCg-UGGCa -3'
miRNA:   3'- -CUGCU--UugCCUGGaGCGG-GGagACCG- -5'
5944 5' -57.4 NC_001806.1 + 51098 0.7 0.660066
Target:  5'- aGACGAGG-GGGCCgcCGCCCUgcgGGCg -3'
miRNA:   3'- -CUGCUUUgCCUGGa-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 147658 0.7 0.650007
Target:  5'- cGCGggGCGGgcgGCCggcucCGCCCCgggGGCc -3'
miRNA:   3'- cUGCuuUGCC---UGGa----GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 137569 0.7 0.650007
Target:  5'- cACGAAGCGcGcCCUgGCCgCCUCcgggGGCg -3'
miRNA:   3'- cUGCUUUGC-CuGGAgCGG-GGAGa---CCG- -5'
5944 5' -57.4 NC_001806.1 + 135299 0.7 0.650007
Target:  5'- cGACGAAuGCGGcgaUCGCCCCgCUGGa -3'
miRNA:   3'- -CUGCUU-UGCCuggAGCGGGGaGACCg -5'
5944 5' -57.4 NC_001806.1 + 81871 0.7 0.639934
Target:  5'- --gGGAGCGGGCCaaaacCGuCCCCcCUGGCc -3'
miRNA:   3'- cugCUUUGCCUGGa----GC-GGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 3553 0.71 0.619779
Target:  5'- gGGCGcgGCGGACagcCGCCCCag-GGCg -3'
miRNA:   3'- -CUGCuuUGCCUGga-GCGGGGagaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.