miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 30436 0.67 0.81908
Target:  5'- gGugGgcACGGGCCcucccgcggcgcCGcCCCCUCcGGCg -3'
miRNA:   3'- -CugCuuUGCCUGGa-----------GC-GGGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 33120 0.69 0.703954
Target:  5'- gGACGggGCccGGACCgccgcggucggggGCCCCUCgucccgGGCc -3'
miRNA:   3'- -CUGCuuUG--CCUGGag-----------CGGGGAGa-----CCG- -5'
5944 5' -57.4 NC_001806.1 + 41830 0.67 0.812249
Target:  5'- --gGggGCGGGCgUCaggGCCCCg--GGCg -3'
miRNA:   3'- cugCuuUGCCUGgAG---CGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 50676 0.68 0.748606
Target:  5'- gGACGAcGCGGcgGCCacgCGCgCCauUCUGGCc -3'
miRNA:   3'- -CUGCUuUGCC--UGGa--GCGgGG--AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 51098 0.7 0.660066
Target:  5'- aGACGAGG-GGGCCgcCGCCCUgcgGGCg -3'
miRNA:   3'- -CUGCUUUgCCUGGa-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 53631 0.69 0.709867
Target:  5'- aGACGAGACaGACCgcaguacaCGCgCCUCacGGCa -3'
miRNA:   3'- -CUGCUUUGcCUGGa-------GCGgGGAGa-CCG- -5'
5944 5' -57.4 NC_001806.1 + 56612 0.66 0.86075
Target:  5'- aGACGuuuuCGGGCCgCGCgaCC-CUGGCc -3'
miRNA:   3'- -CUGCuuu-GCCUGGaGCGg-GGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 57757 0.69 0.71967
Target:  5'- cGGCGGGACGGGCCgcCGUCCCgUCcgccGCa -3'
miRNA:   3'- -CUGCUUUGCCUGGa-GCGGGG-AGac--CG- -5'
5944 5' -57.4 NC_001806.1 + 64883 0.71 0.579634
Target:  5'- cGGCGGGAUcGGCCgcaagaccagCGCCggCCUCUGGCg -3'
miRNA:   3'- -CUGCUUUGcCUGGa---------GCGG--GGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 65636 0.66 0.85313
Target:  5'- gGGCGAGAgGGgccccggcgGCCUC-CCCCUgggUGGCu -3'
miRNA:   3'- -CUGCUUUgCC---------UGGAGcGGGGAg--ACCG- -5'
5944 5' -57.4 NC_001806.1 + 68251 0.66 0.875385
Target:  5'- aACGggGCGGACgaCccgGCgUUUCUGGCc -3'
miRNA:   3'- cUGCuuUGCCUGgaG---CGgGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 68938 0.66 0.845315
Target:  5'- uGACGAcccccgAGCGGGgggcuguggucCCgcCGCCCCUgUUGGCg -3'
miRNA:   3'- -CUGCU------UUGCCU-----------GGa-GCGGGGA-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 69954 0.72 0.559753
Target:  5'- -cCGAccCGGGCUUCGUCCCcuacguUCUGGCc -3'
miRNA:   3'- cuGCUuuGCCUGGAGCGGGG------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 70162 0.67 0.812249
Target:  5'- -cCGggGCGG-CCUCgGCCCCacuaugcagaUGGCc -3'
miRNA:   3'- cuGCuuUGCCuGGAG-CGGGGag--------ACCG- -5'
5944 5' -57.4 NC_001806.1 + 72501 0.67 0.812249
Target:  5'- gGGCGAGaucGCGGGCCUgggggaGCCCUgcgUC-GGCg -3'
miRNA:   3'- -CUGCUU---UGCCUGGAg-----CGGGG---AGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 72869 0.69 0.709867
Target:  5'- --gGAGAUGGGCgUCGUCCCggUUGGUc -3'
miRNA:   3'- cugCUUUGCCUGgAGCGGGGa-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 74062 0.68 0.748606
Target:  5'- gGAgGAGguGCGGACCcagGCCCgUCgGGCg -3'
miRNA:   3'- -CUgCUU--UGCCUGGag-CGGGgAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 75280 0.68 0.739048
Target:  5'- aGCGAccCGG-CCUC-CCCC-CUGGCc -3'
miRNA:   3'- cUGCUuuGCCuGGAGcGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 77269 0.68 0.748606
Target:  5'- cGACGcgguGGCcggGGACCUgGCCCCaugGGCg -3'
miRNA:   3'- -CUGCu---UUG---CCUGGAgCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 79391 0.68 0.748606
Target:  5'- uGACGAcuccGGCGGcCCcgCGCCCCUCcuuGCc -3'
miRNA:   3'- -CUGCU----UUGCCuGGa-GCGGGGAGac-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.