miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 2766 0.66 0.845315
Target:  5'- gGGCGcGGGCGGGCCUgCGCCgCggcGGCc -3'
miRNA:   3'- -CUGC-UUUGCCUGGA-GCGGgGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 2812 0.68 0.748606
Target:  5'- gGGCgGggGCGGGCuCggGCCCCgggGGCg -3'
miRNA:   3'- -CUG-CuuUGCCUG-GagCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 3316 0.66 0.845315
Target:  5'- cGGgGAAGCgGGGCC-CGCggguCCCUCcGGCc -3'
miRNA:   3'- -CUgCUUUG-CCUGGaGCG----GGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 3553 0.71 0.619779
Target:  5'- gGGCGcgGCGGACagcCGCCCCag-GGCg -3'
miRNA:   3'- -CUGCuuUGCCUGga-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 4473 0.66 0.86075
Target:  5'- cGCGcucGACGGACCcCGCCCgaC-GGCc -3'
miRNA:   3'- cUGCu--UUGCCUGGaGCGGGgaGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 5676 0.73 0.482601
Target:  5'- gGGCGGGugGGuccgcGCCcCGCCCCgcaUGGCa -3'
miRNA:   3'- -CUGCUUugCC-----UGGaGCGGGGag-ACCG- -5'
5944 5' -57.4 NC_001806.1 + 7845 0.71 0.579634
Target:  5'- aGugGcucCGGGCCaaccaagagacgUCGCCCCUgUGGCc -3'
miRNA:   3'- -CugCuuuGCCUGG------------AGCGGGGAgACCG- -5'
5944 5' -57.4 NC_001806.1 + 10399 0.66 0.875385
Target:  5'- gGGgGAGGCGGgaGCCgggggGUCCCgCUGGCg -3'
miRNA:   3'- -CUgCUUUGCC--UGGag---CGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 10857 0.66 0.882389
Target:  5'- -cUGGGuCGGGCCgCGCCCCguaGGCc -3'
miRNA:   3'- cuGCUUuGCCUGGaGCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 20566 0.72 0.53811
Target:  5'- gGGCGGGgcGCGGACCcacccgcccucgCGCCCCgcccaUGGCa -3'
miRNA:   3'- -CUGCUU--UGCCUGGa-----------GCGGGGag---ACCG- -5'
5944 5' -57.4 NC_001806.1 + 21287 0.66 0.882389
Target:  5'- cGGCGGGACGGGagg-GCCCCcgCggcgGGCa -3'
miRNA:   3'- -CUGCUUUGCCUggagCGGGGa-Ga---CCG- -5'
5944 5' -57.4 NC_001806.1 + 22062 0.67 0.803567
Target:  5'- cGGCGc--CGGGCCccCGCCCCcggGGCg -3'
miRNA:   3'- -CUGCuuuGCCUGGa-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 22381 0.67 0.820772
Target:  5'- aGCGuggcGCGGGCCgUGCCCCacCUGGg -3'
miRNA:   3'- cUGCuu--UGCCUGGaGCGGGGa-GACCg -5'
5944 5' -57.4 NC_001806.1 + 22665 0.69 0.71967
Target:  5'- cGGCGccGCGGGgauCCUCGCCgCC-CUGGg -3'
miRNA:   3'- -CUGCuuUGCCU---GGAGCGG-GGaGACCg -5'
5944 5' -57.4 NC_001806.1 + 23635 0.66 0.865227
Target:  5'- -cCGAGcucACGGACCacccgcuguucccCGUCCC-CUGGCg -3'
miRNA:   3'- cuGCUU---UGCCUGGa------------GCGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 23793 0.66 0.86075
Target:  5'- cACGggGCcgccgGGGgC-CGCCUCUUUGGCc -3'
miRNA:   3'- cUGCuuUG-----CCUgGaGCGGGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 24306 0.68 0.776651
Target:  5'- cGGCGgcGCgGGACCUgCGCCgCacggugCUGGCc -3'
miRNA:   3'- -CUGCuuUG-CCUGGA-GCGGgGa-----GACCG- -5'
5944 5' -57.4 NC_001806.1 + 24677 0.67 0.837312
Target:  5'- cGCGAGGCGGugCgCGCcggcccggCCCggUGGCg -3'
miRNA:   3'- cUGCUUUGCCugGaGCG--------GGGagACCG- -5'
5944 5' -57.4 NC_001806.1 + 24900 0.68 0.785759
Target:  5'- gGGCgGAGGCGGGCUUggccaCGCCCCcgC-GGCg -3'
miRNA:   3'- -CUG-CUUUGCCUGGA-----GCGGGGa-GaCCG- -5'
5944 5' -57.4 NC_001806.1 + 29857 0.68 0.767416
Target:  5'- cGCGGcuCGGACagCGCCCCcCUcGGCg -3'
miRNA:   3'- cUGCUuuGCCUGgaGCGGGGaGA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.