miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 125700 0.76 0.323257
Target:  5'- cGCGGGuugcugcGCGGcguCCgCGCCCCUCUGGCc -3'
miRNA:   3'- cUGCUU-------UGCCu--GGaGCGGGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 106876 0.74 0.436175
Target:  5'- gGGCGccGAGCaGGGCCcgCGCCCCccucucuUCUGGCg -3'
miRNA:   3'- -CUGC--UUUG-CCUGGa-GCGGGG-------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 5676 0.73 0.482601
Target:  5'- gGGCGGGugGGuccgcGCCcCGCCCCgcaUGGCa -3'
miRNA:   3'- -CUGCUUugCC-----UGGaGCGGGGag-ACCG- -5'
5944 5' -57.4 NC_001806.1 + 135774 0.72 0.520619
Target:  5'- uGGCGAAgcuGCGGcGCC-CGCCCCccCUGGUc -3'
miRNA:   3'- -CUGCUU---UGCC-UGGaGCGGGGa-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 20566 0.72 0.53811
Target:  5'- gGGCGGGgcGCGGACCcacccgcccucgCGCCCCgcccaUGGCa -3'
miRNA:   3'- -CUGCUU--UGCCUGGa-----------GCGGGGag---ACCG- -5'
5944 5' -57.4 NC_001806.1 + 109240 0.72 0.549882
Target:  5'- gGGCGggGCGGAauCCUgGgCCCCg--GGCa -3'
miRNA:   3'- -CUGCuuUGCCU--GGAgC-GGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 69954 0.72 0.559753
Target:  5'- -cCGAccCGGGCUUCGUCCCcuacguUCUGGCc -3'
miRNA:   3'- cuGCUuuGCCUGGAGCGGGG------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 64883 0.71 0.579634
Target:  5'- cGGCGGGAUcGGCCgcaagaccagCGCCggCCUCUGGCg -3'
miRNA:   3'- -CUGCUUUGcCUGGa---------GCGG--GGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 7845 0.71 0.579634
Target:  5'- aGugGcucCGGGCCaaccaagagacgUCGCCCCUgUGGCc -3'
miRNA:   3'- -CugCuuuGCCUGG------------AGCGGGGAgACCG- -5'
5944 5' -57.4 NC_001806.1 + 100923 0.71 0.609711
Target:  5'- uGCGAu-CGGggugcGCCUCGCCCCcCaGGCg -3'
miRNA:   3'- cUGCUuuGCC-----UGGAGCGGGGaGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 3553 0.71 0.619779
Target:  5'- gGGCGcgGCGGACagcCGCCCCag-GGCg -3'
miRNA:   3'- -CUGCuuUGCCUGga-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 81871 0.7 0.639934
Target:  5'- --gGGAGCGGGCCaaaacCGuCCCCcCUGGCc -3'
miRNA:   3'- cugCUUUGCCUGGa----GC-GGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 147658 0.7 0.650007
Target:  5'- cGCGggGCGGgcgGCCggcucCGCCCCgggGGCc -3'
miRNA:   3'- cUGCuuUGCC---UGGa----GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 137569 0.7 0.650007
Target:  5'- cACGAAGCGcGcCCUgGCCgCCUCcgggGGCg -3'
miRNA:   3'- cUGCUUUGC-CuGGAgCGG-GGAGa---CCG- -5'
5944 5' -57.4 NC_001806.1 + 135299 0.7 0.650007
Target:  5'- cGACGAAuGCGGcgaUCGCCCCgCUGGa -3'
miRNA:   3'- -CUGCUU-UGCCuggAGCGGGGaGACCg -5'
5944 5' -57.4 NC_001806.1 + 51098 0.7 0.660066
Target:  5'- aGACGAGG-GGGCCgcCGCCCUgcgGGCg -3'
miRNA:   3'- -CUGCUUUgCCUGGa-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 90842 0.7 0.670103
Target:  5'- aGGCGGucGugGGACC-CGCCgCCg-UGGCa -3'
miRNA:   3'- -CUGCU--UugCCUGGaGCGG-GGagACCG- -5'
5944 5' -57.4 NC_001806.1 + 86046 0.7 0.68011
Target:  5'- gGGgGggGCGGG-CUCGuCCCCUggGGCg -3'
miRNA:   3'- -CUgCuuUGCCUgGAGC-GGGGAgaCCG- -5'
5944 5' -57.4 NC_001806.1 + 33120 0.69 0.703954
Target:  5'- gGACGggGCccGGACCgccgcggucggggGCCCCUCgucccgGGCc -3'
miRNA:   3'- -CUGCuuUG--CCUGGag-----------CGGGGAGa-----CCG- -5'
5944 5' -57.4 NC_001806.1 + 72869 0.69 0.709867
Target:  5'- --gGAGAUGGGCgUCGUCCCggUUGGUc -3'
miRNA:   3'- cugCUUUGCCUGgAGCGGGGa-GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.