miRNA display CGI


Results 41 - 60 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 150704 0.69 0.698023
Target:  5'- gUCCCGCCcCcGAGGCGGCccgcccugugaGGGCGGGc -3'
miRNA:   3'- -AGGGCGGcGaUUCCGCUG-----------CUCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 5916 0.69 0.698023
Target:  5'- cCuuGCCGCccccccauuGGcCGGCGGGCGGGAc -3'
miRNA:   3'- aGggCGGCGauu------CC-GCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 2501 0.69 0.698023
Target:  5'- -gCCGCCGCacgcggccuGGGCGGCGggGGCGGGc -3'
miRNA:   3'- agGGCGGCGau-------UCCGCUGC--UCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 30489 0.69 0.683987
Target:  5'- cUCCGCCGCcucugucgagcagGAGGCGGCGGuGCGuccgaGGAa -3'
miRNA:   3'- aGGGCGGCGa------------UUCCGCUGCU-CGU-----UCU- -5'
5945 5' -57.2 NC_001806.1 + 45500 0.69 0.677944
Target:  5'- aCCCGCC-CUGugugGGGUGAgGGGUggGGg -3'
miRNA:   3'- aGGGCGGcGAU----UCCGCUgCUCGuuCU- -5'
5945 5' -57.2 NC_001806.1 + 19630 0.69 0.677944
Target:  5'- uUCCCcCCGCc----CGACGAGCAGGAa -3'
miRNA:   3'- -AGGGcGGCGauuccGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 106787 0.69 0.677944
Target:  5'- cUCCGCCGCguGGGCGGCuacccggaggaGGGCAcGAa -3'
miRNA:   3'- aGGGCGGCGauUCCGCUG-----------CUCGUuCU- -5'
5945 5' -57.2 NC_001806.1 + 20368 0.7 0.667846
Target:  5'- gCCCGCCGUcccguUGGucccGGCGuccgGCGGGCGGGAc -3'
miRNA:   3'- aGGGCGGCG-----AUU----CCGC----UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 73984 0.7 0.657718
Target:  5'- gCCCGCCccgGCcGGGGCGGCcccGCAGGGg -3'
miRNA:   3'- aGGGCGG---CGaUUCCGCUGcu-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 23738 0.7 0.657718
Target:  5'- cCCCGCCGCccAGGCcGCGuGCGGc- -3'
miRNA:   3'- aGGGCGGCGauUCCGcUGCuCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 2930 0.7 0.657718
Target:  5'- -gCCGCCGCcuccGGGCGGcCGGGCcGGGc -3'
miRNA:   3'- agGGCGGCGau--UCCGCU-GCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 95060 0.7 0.657718
Target:  5'- -aCUGgCGCUGuucGGGCGGCGGGC-GGAg -3'
miRNA:   3'- agGGCgGCGAU---UCCGCUGCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 78374 0.7 0.63741
Target:  5'- gUCCCGCCcaggcGCUGGcGGCGGUGAGCGu-- -3'
miRNA:   3'- -AGGGCGG-----CGAUU-CCGCUGCUCGUucu -5'
5945 5' -57.2 NC_001806.1 + 56842 0.7 0.627246
Target:  5'- -aCCGCCGCggccAGGGCGGCcgcGGCGGGc -3'
miRNA:   3'- agGGCGGCGa---UUCCGCUGc--UCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 21163 0.7 0.617086
Target:  5'- -gCCGCCGCccaccccGAGcccagaccGCGACGAGCGGGGg -3'
miRNA:   3'- agGGCGGCGa------UUC--------CGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 46217 0.71 0.596806
Target:  5'- cCCCGCgGCcccGGCGGCGgagaccacccgcGGCAGGAa -3'
miRNA:   3'- aGGGCGgCGauuCCGCUGC------------UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 23313 0.71 0.576629
Target:  5'- gCCCgGCCGCccgGAGGCGGCGGcccGCGAc- -3'
miRNA:   3'- aGGG-CGGCGa--UUCCGCUGCU---CGUUcu -5'
5945 5' -57.2 NC_001806.1 + 100380 0.71 0.566596
Target:  5'- cUCCCGUCGCc-GGGCGGCGcgggGGCcGGGg -3'
miRNA:   3'- -AGGGCGGCGauUCCGCUGC----UCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 48899 0.72 0.556608
Target:  5'- uUCCCauuugGCCggggGCUGGGGCGGCGGGUAGc- -3'
miRNA:   3'- -AGGG-----CGG----CGAUUCCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 29804 0.72 0.556608
Target:  5'- -gCCGCCGCgccccccGUGACGGGCGGGGc -3'
miRNA:   3'- agGGCGGCGauuc---CGCUGCUCGUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.