miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 23044 0.66 0.875167
Target:  5'- aCCUGCgCGUggccGGCGGC-AGCGAGGc -3'
miRNA:   3'- aGGGCG-GCGauu-CCGCUGcUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 23267 0.68 0.766108
Target:  5'- cUCCGCCGCgccgcggGAGG-GGCGcaagcGCAAGAg -3'
miRNA:   3'- aGGGCGGCGa------UUCCgCUGCu----CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 23313 0.71 0.576629
Target:  5'- gCCCgGCCGCccgGAGGCGGCGGcccGCGAc- -3'
miRNA:   3'- aGGG-CGGCGa--UUCCGCUGCU---CGUUcu -5'
5945 5' -57.2 NC_001806.1 + 23738 0.7 0.657718
Target:  5'- cCCCGCCGCccAGGCcGCGuGCGGc- -3'
miRNA:   3'- aGGGCGGCGauUCCGcUGCuCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 23911 0.73 0.497951
Target:  5'- aCUCGCCGCUGccGGGCGAgGAccuggccggcgGCGGGGc -3'
miRNA:   3'- aGGGCGGCGAU--UCCGCUgCU-----------CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 24277 0.66 0.865658
Target:  5'- gCCCGCCGUgcAGuGCGccgugcgcuggccgGCGGcGCGGGAc -3'
miRNA:   3'- aGGGCGGCGauUC-CGC--------------UGCU-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 29804 0.72 0.556608
Target:  5'- -gCCGCCGCgccccccGUGACGGGCGGGGc -3'
miRNA:   3'- agGGCGGCGauuc---CGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 30489 0.69 0.683987
Target:  5'- cUCCGCCGCcucugucgagcagGAGGCGGCGGuGCGuccgaGGAa -3'
miRNA:   3'- aGGGCGGCGa------------UUCCGCUGCU-CGU-----UCU- -5'
5945 5' -57.2 NC_001806.1 + 33615 0.66 0.875167
Target:  5'- -aCCGgCGC-GGGGCGGgGGGCcGGAu -3'
miRNA:   3'- agGGCgGCGaUUCCGCUgCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 36203 0.68 0.756662
Target:  5'- cUCUGCCGCgcGGGCGGCcaugccgcugGAGCugauGGAg -3'
miRNA:   3'- aGGGCGGCGauUCCGCUG----------CUCGu---UCU- -5'
5945 5' -57.2 NC_001806.1 + 41450 0.66 0.844004
Target:  5'- -gCCGCCGCUucGGCGgacACGAccgcuucggccagGCGAGc -3'
miRNA:   3'- agGGCGGCGAuuCCGC---UGCU-------------CGUUCu -5'
5945 5' -57.2 NC_001806.1 + 45500 0.69 0.677944
Target:  5'- aCCCGCC-CUGugugGGGUGAgGGGUggGGg -3'
miRNA:   3'- aGGGCGGcGAU----UCCGCUgCUCGuuCU- -5'
5945 5' -57.2 NC_001806.1 + 46217 0.71 0.596806
Target:  5'- cCCCGCgGCcccGGCGGCGgagaccacccgcGGCAGGAa -3'
miRNA:   3'- aGGGCGgCGauuCCGCUGC------------UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 47045 0.67 0.814866
Target:  5'- cCCgCGCCGUc-GGGCGucccacacucucuggGCGGGCGGGGa -3'
miRNA:   3'- aGG-GCGGCGauUCCGC---------------UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 48899 0.72 0.556608
Target:  5'- uUCCCauuugGCCggggGCUGGGGCGGCGGGUAGc- -3'
miRNA:   3'- -AGGG-----CGG----CGAUUCCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 49156 0.66 0.841593
Target:  5'- gCCCGUgGCggacgagccagcGGGCGAUGGGguGGGg -3'
miRNA:   3'- aGGGCGgCGau----------UCCGCUGCUCguUCU- -5'
5945 5' -57.2 NC_001806.1 + 49932 0.68 0.747107
Target:  5'- cCCCGCC-C--AGGCGAUGAGCu--- -3'
miRNA:   3'- aGGGCGGcGauUCCGCUGCUCGuucu -5'
5945 5' -57.2 NC_001806.1 + 51575 0.67 0.80263
Target:  5'- cUUCgGCCGCcacccAGGCGcUGGGCGAGGu -3'
miRNA:   3'- -AGGgCGGCGau---UCCGCuGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 56708 0.68 0.765169
Target:  5'- cCCCggGUCGCUcuggguccuccggGGGGCGGCGGGaaaGAGAc -3'
miRNA:   3'- aGGG--CGGCGA-------------UUCCGCUGCUCg--UUCU- -5'
5945 5' -57.2 NC_001806.1 + 56842 0.7 0.627246
Target:  5'- -aCCGCCGCggccAGGGCGGCcgcGGCGGGc -3'
miRNA:   3'- agGGCGGCGa---UUCCGCUGc--UCGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.