miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 1329 0.75 0.365722
Target:  5'- uUCCCGCCGCgGGGGCGugGc-CAAGc -3'
miRNA:   3'- -AGGGCGGCGaUUCCGCugCucGUUCu -5'
5945 5' -57.2 NC_001806.1 + 1630 0.73 0.497951
Target:  5'- cCCCaGCgCGCgcAGGCGGCGuGCGAGu -3'
miRNA:   3'- aGGG-CG-GCGauUCCGCUGCuCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 2501 0.69 0.698023
Target:  5'- -gCCGCCGCacgcggccuGGGCGGCGggGGCGGGc -3'
miRNA:   3'- agGGCGGCGau-------UCCGCUGC--UCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 2930 0.7 0.657718
Target:  5'- -gCCGCCGCcuccGGGCGGcCGGGCcGGGc -3'
miRNA:   3'- agGGCGGCGau--UCCGCU-GCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 2981 0.74 0.424439
Target:  5'- cUCCCGCgGCgcgggGAGGCGGCG-GCGGc- -3'
miRNA:   3'- -AGGGCGgCGa----UUCCGCUGCuCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 3340 0.75 0.381917
Target:  5'- cUCCgGCCGCggGGGGCuGGCGGGCcGGGc -3'
miRNA:   3'- -AGGgCGGCGa-UUCCG-CUGCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 3431 0.66 0.867884
Target:  5'- aUCCCGCgGC--AGGCGGCcaGGCAc-- -3'
miRNA:   3'- -AGGGCGgCGauUCCGCUGc-UCGUucu -5'
5945 5' -57.2 NC_001806.1 + 4333 0.66 0.875167
Target:  5'- -aCCGCCGCgcGGGCccGGCGGcGCucGAu -3'
miRNA:   3'- agGGCGGCGauUCCG--CUGCU-CGuuCU- -5'
5945 5' -57.2 NC_001806.1 + 4654 0.66 0.844804
Target:  5'- cUCCGCgGCggcuGGGcCGGCGGGCGcGGc -3'
miRNA:   3'- aGGGCGgCGau--UCC-GCUGCUCGUuCU- -5'
5945 5' -57.2 NC_001806.1 + 5101 0.68 0.78464
Target:  5'- gCCCGUCGgUGGGGCccGGgGAGCcGGGg -3'
miRNA:   3'- aGGGCGGCgAUUCCG--CUgCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 5745 0.66 0.852696
Target:  5'- gUUCCGCaUGCUaacGAGGa-ACGGGCAGGGg -3'
miRNA:   3'- -AGGGCG-GCGA---UUCCgcUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 5916 0.69 0.698023
Target:  5'- cCuuGCCGCccccccauuGGcCGGCGGGCGGGAc -3'
miRNA:   3'- aGggCGGCGauu------CC-GCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 19630 0.69 0.677944
Target:  5'- uUCCCcCCGCc----CGACGAGCAGGAa -3'
miRNA:   3'- -AGGGcGGCGauuccGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 20322 0.73 0.479005
Target:  5'- gCCCGCCGgccaaUGGGGgGGCG-GCAAGGc -3'
miRNA:   3'- aGGGCGGCg----AUUCCgCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 20368 0.7 0.667846
Target:  5'- gCCCGCCGUcccguUGGucccGGCGuccgGCGGGCGGGAc -3'
miRNA:   3'- aGGGCGGCG-----AUU----CCGC----UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 20721 0.74 0.415709
Target:  5'- gCCCGCCGggGGGGCGGgGGGCcGGc -3'
miRNA:   3'- aGGGCGGCgaUUCCGCUgCUCGuUCu -5'
5945 5' -57.2 NC_001806.1 + 21163 0.7 0.617086
Target:  5'- -gCCGCCGCccaccccGAGcccagaccGCGACGAGCGGGGg -3'
miRNA:   3'- agGGCGGCGa------UUC--------CGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 21304 0.67 0.820012
Target:  5'- cCCCGCgGC--GGGCaccGACGccGGCGAGGa -3'
miRNA:   3'- aGGGCGgCGauUCCG---CUGC--UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 21844 0.67 0.818304
Target:  5'- cUCCgagGCCGCgcccaagccccGGGCGGCG-GCGAGGa -3'
miRNA:   3'- -AGGg--CGGCGau---------UCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 22716 0.66 0.844804
Target:  5'- cUCCC-CCGCggGGGGCGACGAc----- -3'
miRNA:   3'- -AGGGcGGCGa-UUCCGCUGCUcguucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.