miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 103810 0.76 0.342331
Target:  5'- -gCCGCCGCggcGGCGACGGGCucgcuGGGu -3'
miRNA:   3'- agGGCGGCGauuCCGCUGCUCGu----UCU- -5'
5945 5' -57.2 NC_001806.1 + 72822 0.75 0.365722
Target:  5'- cCCCGCCGCaGAGGCGGcCGAagAAGAu -3'
miRNA:   3'- aGGGCGGCGaUUCCGCU-GCUcgUUCU- -5'
5945 5' -57.2 NC_001806.1 + 1329 0.75 0.365722
Target:  5'- uUCCCGCCGCgGGGGCGugGc-CAAGc -3'
miRNA:   3'- -AGGGCGGCGaUUCCGCugCucGUUCu -5'
5945 5' -57.2 NC_001806.1 + 94804 0.75 0.381917
Target:  5'- gCCCGgaCGCggGGGGCGACGGGCAGc- -3'
miRNA:   3'- aGGGCg-GCGa-UUCCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 3340 0.75 0.381917
Target:  5'- cUCCgGCCGCggGGGGCuGGCGGGCcGGGc -3'
miRNA:   3'- -AGGgCGGCGa-UUCCG-CUGCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 20721 0.74 0.415709
Target:  5'- gCCCGCCGggGGGGCGGgGGGCcGGc -3'
miRNA:   3'- aGGGCGGCgaUUCCGCUgCUCGuUCu -5'
5945 5' -57.2 NC_001806.1 + 2981 0.74 0.424439
Target:  5'- cUCCCGCgGCgcgggGAGGCGGCG-GCGGc- -3'
miRNA:   3'- -AGGGCGgCGa----UUCCGCUGCuCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 82670 0.74 0.444926
Target:  5'- -aCCGCCGCgaaucuuucccgcuuGGCGGCGAGCAGc- -3'
miRNA:   3'- agGGCGGCGauu------------CCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 111316 0.73 0.460419
Target:  5'- aCCCGUCGCguucuaacGGGgGugGGGCGGGGg -3'
miRNA:   3'- aGGGCGGCGau------UCCgCugCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 20322 0.73 0.479005
Target:  5'- gCCCGCCGgccaaUGGGGgGGCG-GCAAGGc -3'
miRNA:   3'- aGGGCGGCg----AUUCCgCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 23911 0.73 0.497951
Target:  5'- aCUCGCCGCUGccGGGCGAgGAccuggccggcgGCGGGGc -3'
miRNA:   3'- aGGGCGGCGAU--UCCGCUgCU-----------CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 1630 0.73 0.497951
Target:  5'- cCCCaGCgCGCgcAGGCGGCGuGCGAGu -3'
miRNA:   3'- aGGG-CG-GCGauUCCGCUGCuCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 48899 0.72 0.556608
Target:  5'- uUCCCauuugGCCggggGCUGGGGCGGCGGGUAGc- -3'
miRNA:   3'- -AGGG-----CGG----CGAUUCCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 29804 0.72 0.556608
Target:  5'- -gCCGCCGCgccccccGUGACGGGCGGGGc -3'
miRNA:   3'- agGGCGGCGauuc---CGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 100380 0.71 0.566596
Target:  5'- cUCCCGUCGCc-GGGCGGCGcgggGGCcGGGg -3'
miRNA:   3'- -AGGGCGGCGauUCCGCUGC----UCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 23313 0.71 0.576629
Target:  5'- gCCCgGCCGCccgGAGGCGGCGGcccGCGAc- -3'
miRNA:   3'- aGGG-CGGCGa--UUCCGCUGCU---CGUUcu -5'
5945 5' -57.2 NC_001806.1 + 46217 0.71 0.596806
Target:  5'- cCCCGCgGCcccGGCGGCGgagaccacccgcGGCAGGAa -3'
miRNA:   3'- aGGGCGgCGauuCCGCUGC------------UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 21163 0.7 0.617086
Target:  5'- -gCCGCCGCccaccccGAGcccagaccGCGACGAGCGGGGg -3'
miRNA:   3'- agGGCGGCGa------UUC--------CGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 56842 0.7 0.627246
Target:  5'- -aCCGCCGCggccAGGGCGGCcgcGGCGGGc -3'
miRNA:   3'- agGGCGGCGa---UUCCGCUGc--UCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 78374 0.7 0.63741
Target:  5'- gUCCCGCCcaggcGCUGGcGGCGGUGAGCGu-- -3'
miRNA:   3'- -AGGGCGG-----CGAUU-CCGCUGCUCGUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.