miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 91778 0.68 0.953111
Target:  5'- cCUUCUcggcccuGAAGCGCGcGGAcGGAUccgagaccGCCGGa -3'
miRNA:   3'- -GAAGG-------UUUUGCGCuCCU-CCUA--------CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 4825 0.68 0.949368
Target:  5'- -gUCCGGGGCgGCGAGGccgcGGGGUcgggcGUCGGg -3'
miRNA:   3'- gaAGGUUUUG-CGCUCC----UCCUA-----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 31359 0.68 0.944982
Target:  5'- --cCCGuguuuGugGgGAGGGGGggGUCGGg -3'
miRNA:   3'- gaaGGUu----UugCgCUCCUCCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 18592 0.68 0.940353
Target:  5'- uUUCCAGcguAACG-GGGGAGGGggcauccuccgUGUCGGa -3'
miRNA:   3'- gAAGGUU---UUGCgCUCCUCCU-----------ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 33308 0.69 0.935481
Target:  5'- --gCCGGccGGCGCuuagGGGGAGGAUGUCGc -3'
miRNA:   3'- gaaGGUU--UUGCG----CUCCUCCUACGGCc -5'
5946 3' -52.5 NC_001806.1 + 95250 0.69 0.935481
Target:  5'- --cCCGAAcaguGCGaCGAGGAGGcgcugcgucgcGUGCUGGc -3'
miRNA:   3'- gaaGGUUU----UGC-GCUCCUCC-----------UACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 26812 0.69 0.930363
Target:  5'- cCUgcgCCugcGACGCGcgggcgGGGAGGGggcGCCGGa -3'
miRNA:   3'- -GAa--GGuu-UUGCGC------UCCUCCUa--CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 53885 0.69 0.930363
Target:  5'- --gCC---GCGCGGGGAucaGGGUcGCCGGg -3'
miRNA:   3'- gaaGGuuuUGCGCUCCU---CCUA-CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 48984 0.69 0.919389
Target:  5'- aUUCCcau-CGCGAGGGGGu--CCGGc -3'
miRNA:   3'- gAAGGuuuuGCGCUCCUCCuacGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25586 0.69 0.919389
Target:  5'- --gCUggGGC-CGGGGAGGGcugggGCCGGg -3'
miRNA:   3'- gaaGGuuUUGcGCUCCUCCUa----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25554 0.69 0.919389
Target:  5'- --gCUggGGC-CGGGGAGGGcugggGCCGGg -3'
miRNA:   3'- gaaGGuuUUGcGCUCCUCCUa----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25957 0.7 0.907432
Target:  5'- --gCCGcggGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaGGU---UUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 100388 0.7 0.907432
Target:  5'- --gCCGGgcGGCGCGGGGgccGGGGUGCCc- -3'
miRNA:   3'- gaaGGUU--UUGCGCUCC---UCCUACGGcc -5'
5946 3' -52.5 NC_001806.1 + 59166 0.7 0.907432
Target:  5'- -gUgCGGGACGCgGAGGGGGcguAUGCCGc -3'
miRNA:   3'- gaAgGUUUUGCG-CUCCUCC---UACGGCc -5'
5946 3' -52.5 NC_001806.1 + 20912 0.7 0.901088
Target:  5'- ---aCGAAGCGCggGAGGGGGAUcgGCCGu -3'
miRNA:   3'- gaagGUUUUGCG--CUCCUCCUA--CGGCc -5'
5946 3' -52.5 NC_001806.1 + 128562 0.7 0.901088
Target:  5'- -gUCCAGGGCGCGgucguagcGGGAGGucacggcGCCGa -3'
miRNA:   3'- gaAGGUUUUGCGC--------UCCUCCua-----CGGCc -5'
5946 3' -52.5 NC_001806.1 + 24670 0.7 0.901088
Target:  5'- --gCUggGGCGCGAGGcGGugcgcGCCGGc -3'
miRNA:   3'- gaaGGuuUUGCGCUCCuCCua---CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 2854 0.7 0.894505
Target:  5'- -----cGGGCGCGGGGAGGGggGCgCGGg -3'
miRNA:   3'- gaagguUUUGCGCUCCUCCUa-CG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 15082 0.7 0.887686
Target:  5'- -gUCuCGGGGCGCGcGGGGGAguUGuuGGg -3'
miRNA:   3'- gaAG-GUUUUGCGCuCCUCCU--ACggCC- -5'
5946 3' -52.5 NC_001806.1 + 83982 0.7 0.880634
Target:  5'- --gCCGGGGacCGCGAgccGGAGGAgucGCCGGa -3'
miRNA:   3'- gaaGGUUUU--GCGCU---CCUCCUa--CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.