miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 26010 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26034 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26058 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26082 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26106 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26130 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26154 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26812 0.69 0.930363
Target:  5'- cCUgcgCCugcGACGCGcgggcgGGGAGGGggcGCCGGa -3'
miRNA:   3'- -GAa--GGuu-UUGCGC------UCCUCCUa--CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 28170 0.73 0.761005
Target:  5'- --cCCA--GCGCGAGGugAGGG-GCCGGg -3'
miRNA:   3'- gaaGGUuuUGCGCUCC--UCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 30856 0.67 0.973626
Target:  5'- gCUUCUggGcCGCGGGGgccgAGGAagugUGcCCGGa -3'
miRNA:   3'- -GAAGGuuUuGCGCUCC----UCCU----AC-GGCC- -5'
5946 3' -52.5 NC_001806.1 + 31359 0.68 0.944982
Target:  5'- --cCCGuguuuGugGgGAGGGGGggGUCGGg -3'
miRNA:   3'- gaaGGUu----UugCgCUCCUCCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 33308 0.69 0.935481
Target:  5'- --gCCGGccGGCGCuuagGGGGAGGAUGUCGc -3'
miRNA:   3'- gaaGGUU--UUGCG----CUCCUCCUACGGCc -5'
5946 3' -52.5 NC_001806.1 + 33615 0.75 0.660101
Target:  5'- --aCCG--GCGCGGGGcGGGggGCCGGa -3'
miRNA:   3'- gaaGGUuuUGCGCUCC-UCCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 33641 0.71 0.850203
Target:  5'- --cCCAcacGGGCGgGGGGGGGGUGUCGcGg -3'
miRNA:   3'- gaaGGU---UUUGCgCUCCUCCUACGGC-C- -5'
5946 3' -52.5 NC_001806.1 + 34783 0.66 0.978649
Target:  5'- gUUCgGGGGgGgGGGGGGGggGCgGGa -3'
miRNA:   3'- gAAGgUUUUgCgCUCCUCCuaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 37827 0.66 0.980877
Target:  5'- --gCCAGcgucauuaGCGGGGGGGGUGCUuGGc -3'
miRNA:   3'- gaaGGUUuug-----CGCUCCUCCUACGG-CC- -5'
5946 3' -52.5 NC_001806.1 + 47602 0.67 0.96355
Target:  5'- uCUUCCAcgccgagcuacGGGCGCG-GGAGGAgagcuaucgaaccgUGuuGGc -3'
miRNA:   3'- -GAAGGU-----------UUUGCGCuCCUCCU--------------ACggCC- -5'
5946 3' -52.5 NC_001806.1 + 48984 0.69 0.919389
Target:  5'- aUUCCcau-CGCGAGGGGGu--CCGGc -3'
miRNA:   3'- gAAGGuuuuGCGCUCCUCCuacGGCC- -5'
5946 3' -52.5 NC_001806.1 + 52589 0.66 0.982926
Target:  5'- --cCCGGGggggcaucGCGCGGGGgguGGGAccUGUCGGg -3'
miRNA:   3'- gaaGGUUU--------UGCGCUCC---UCCU--ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 53378 0.66 0.980877
Target:  5'- --aCCAagcuuAAACGCGaAGGAcgccGGA-GCCGGu -3'
miRNA:   3'- gaaGGU-----UUUGCGC-UCCU----CCUaCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.