miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 2854 0.7 0.894505
Target:  5'- -----cGGGCGCGGGGAGGGggGCgCGGg -3'
miRNA:   3'- gaagguUUUGCGCUCCUCCUa-CG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 2983 0.74 0.711423
Target:  5'- --cCCGcgGCGCGGGGAGGcgGCggCGGc -3'
miRNA:   3'- gaaGGUuuUGCGCUCCUCCuaCG--GCC- -5'
5946 3' -52.5 NC_001806.1 + 3340 0.67 0.973626
Target:  5'- -cUCCGGc-CGCGGGGGGcuggcggGCCGGg -3'
miRNA:   3'- gaAGGUUuuGCGCUCCUCcua----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 4825 0.68 0.949368
Target:  5'- -gUCCGGGGCgGCGAGGccgcGGGGUcgggcGUCGGg -3'
miRNA:   3'- gaAGGUUUUG-CGCUCC----UCCUA-----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 6655 0.66 0.984805
Target:  5'- gCUUCCugcuCGuCGGGGGGGAgcaUGUCGu -3'
miRNA:   3'- -GAAGGuuuuGC-GCUCCUCCU---ACGGCc -5'
5946 3' -52.5 NC_001806.1 + 10374 0.68 0.961109
Target:  5'- gCUgggCCAAGaccucggggggGCGgGGGGAGGcgggaGCCGGg -3'
miRNA:   3'- -GAa--GGUUU-----------UGCgCUCCUCCua---CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 11428 0.72 0.807648
Target:  5'- --gCCGGGAUuuGGGGGGGGUGCuCGGa -3'
miRNA:   3'- gaaGGUUUUGcgCUCCUCCUACG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 15082 0.7 0.887686
Target:  5'- -gUCuCGGGGCGCGcGGGGGAguUGuuGGg -3'
miRNA:   3'- gaAG-GUUUUGCGCuCCUCCU--ACggCC- -5'
5946 3' -52.5 NC_001806.1 + 18592 0.68 0.940353
Target:  5'- uUUCCAGcguAACG-GGGGAGGGggcauccuccgUGUCGGa -3'
miRNA:   3'- gAAGGUU---UUGCgCUCCUCCU-----------ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 20912 0.7 0.901088
Target:  5'- ---aCGAAGCGCggGAGGGGGAUcgGCCGu -3'
miRNA:   3'- gaagGUUUUGCG--CUCCUCCUA--CGGCc -5'
5946 3' -52.5 NC_001806.1 + 21317 0.66 0.984805
Target:  5'- --aCCG--ACGCcGGcGAGGAcGCCGGg -3'
miRNA:   3'- gaaGGUuuUGCGcUC-CUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 21747 0.66 0.982926
Target:  5'- --aCCAcgcACGCGAGGcgcGGGccGUCGGg -3'
miRNA:   3'- gaaGGUuu-UGCGCUCC---UCCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 22138 0.72 0.816521
Target:  5'- --cCCGAGGCG-GAGGAGGcgcgacGCCGGu -3'
miRNA:   3'- gaaGGUUUUGCgCUCCUCCua----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 24583 0.67 0.964563
Target:  5'- --gCCGGAcuucUGCGAGGAGGAgGCCc- -3'
miRNA:   3'- gaaGGUUUu---GCGCUCCUCCUaCGGcc -5'
5946 3' -52.5 NC_001806.1 + 24670 0.7 0.901088
Target:  5'- --gCUggGGCGCGAGGcGGugcgcGCCGGc -3'
miRNA:   3'- gaaGGuuUUGCGCUCCuCCua---CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25519 0.72 0.816521
Target:  5'- ---gCGGGACGCGccgGGGAGGGcugggGCCGGg -3'
miRNA:   3'- gaagGUUUUGCGC---UCCUCCUa----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25554 0.69 0.919389
Target:  5'- --gCUggGGC-CGGGGAGGGcugggGCCGGg -3'
miRNA:   3'- gaaGGuuUUGcGCUCCUCCUa----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25586 0.69 0.919389
Target:  5'- --gCUggGGC-CGGGGAGGGcugggGCCGGg -3'
miRNA:   3'- gaaGGuuUUGcGCUCCUCCUa----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 25957 0.7 0.907432
Target:  5'- --gCCGcggGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaGGU---UUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 25986 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.