miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 64648 0.77 0.536469
Target:  5'- -cUCCGuGAgGCGAGGGGGGcUGCCGa -3'
miRNA:   3'- gaAGGUuUUgCGCUCCUCCU-ACGGCc -5'
5946 3' -52.5 NC_001806.1 + 83802 0.77 0.536469
Target:  5'- -cUCCGGGG-GCGAGGAGGggGCgGGg -3'
miRNA:   3'- gaAGGUUUUgCGCUCCUCCuaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 66533 0.76 0.618567
Target:  5'- --gCCAGGccCGCGAGGGGGAaGUCGGg -3'
miRNA:   3'- gaaGGUUUu-GCGCUCCUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 33615 0.75 0.660101
Target:  5'- --aCCG--GCGCGGGGcGGGggGCCGGa -3'
miRNA:   3'- gaaGGUuuUGCGCUCC-UCCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 142018 0.75 0.670448
Target:  5'- -cUCUAGGGCgGCGAGGAGcGccGCCGGc -3'
miRNA:   3'- gaAGGUUUUG-CGCUCCUC-CuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 145618 0.75 0.677672
Target:  5'- gUUCCuaaa-GCGAGGAuacggaggaguggcGGGUGCCGGg -3'
miRNA:   3'- gAAGGuuuugCGCUCCU--------------CCUACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 84423 0.74 0.711423
Target:  5'- --cCCGAGACGCagcccGGGGAcGGggGCCGGu -3'
miRNA:   3'- gaaGGUUUUGCG-----CUCCU-CCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 2983 0.74 0.711423
Target:  5'- --cCCGcgGCGCGGGGAGGcgGCggCGGc -3'
miRNA:   3'- gaaGGUuuUGCGCUCCUCCuaCG--GCC- -5'
5946 3' -52.5 NC_001806.1 + 28170 0.73 0.761005
Target:  5'- --cCCA--GCGCGAGGugAGGG-GCCGGg -3'
miRNA:   3'- gaaGGUuuUGCGCUCC--UCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 11428 0.72 0.807648
Target:  5'- --gCCGGGAUuuGGGGGGGGUGCuCGGa -3'
miRNA:   3'- gaaGGUUUUGcgCUCCUCCUACG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 25519 0.72 0.816521
Target:  5'- ---gCGGGACGCGccgGGGAGGGcugggGCCGGg -3'
miRNA:   3'- gaagGUUUUGCGC---UCCUCCUa----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 22138 0.72 0.816521
Target:  5'- --cCCGAGGCG-GAGGAGGcgcgacGCCGGu -3'
miRNA:   3'- gaaGGUUUUGCgCUCCUCCua----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 76055 0.72 0.816521
Target:  5'- gCUUCUGcgGCugGCGGGGGGGcUGCUGGa -3'
miRNA:   3'- -GAAGGUuuUG--CGCUCCUCCuACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 71746 0.72 0.816521
Target:  5'- -cUCCAcgaugGAACGCGGGGGGGAUcGCg-- -3'
miRNA:   3'- gaAGGU-----UUUGCGCUCCUCCUA-CGgcc -5'
5946 3' -52.5 NC_001806.1 + 100202 0.72 0.832896
Target:  5'- --cCCGGgauacugaugggcGACGUGGGGAGGGuaaUGCUGGg -3'
miRNA:   3'- gaaGGUU-------------UUGCGCUCCUCCU---ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 85748 0.72 0.83374
Target:  5'- -gUCCGGAgccGCGCGGccacgucguccGGGGGGUGCCa- -3'
miRNA:   3'- gaAGGUUU---UGCGCU-----------CCUCCUACGGcc -5'
5946 3' -52.5 NC_001806.1 + 147689 0.71 0.84207
Target:  5'- --gCCGGGGCGCGGGGGcGGGccCCGGa -3'
miRNA:   3'- gaaGGUUUUGCGCUCCU-CCUacGGCC- -5'
5946 3' -52.5 NC_001806.1 + 33641 0.71 0.850203
Target:  5'- --cCCAcacGGGCGgGGGGGGGGUGUCGcGg -3'
miRNA:   3'- gaaGGU---UUUGCgCUCCUCCUACGGC-C- -5'
5946 3' -52.5 NC_001806.1 + 66649 0.71 0.850203
Target:  5'- -cUCCAAcccGCGCG-GGGGGA-GCUGGc -3'
miRNA:   3'- gaAGGUUu--UGCGCuCCUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 113390 0.71 0.873354
Target:  5'- gUUCCGGGACGCccGGGGccuGGA-GCUGGg -3'
miRNA:   3'- gAAGGUUUUGCG--CUCCu--CCUaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.