Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 5' | -62.7 | NC_001806.1 | + | 134830 | 0.68 | 0.536631 |
Target: 5'- -aCCG-CgGCUggCGGUCGCCGaCCUGGCg -3' miRNA: 3'- caGGCaG-CGG--GCCAGUGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 129806 | 0.68 | 0.536631 |
Target: 5'- -aUCGUgGCCCGGUUcuGCCGUCaguuuaCGGa -3' miRNA: 3'- caGGCAgCGGGCCAG--UGGCAGg-----GCCg -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 126484 | 0.68 | 0.536631 |
Target: 5'- cUUCG-CGCCCGGgCG-CGUCcCCGGCc -3' miRNA: 3'- cAGGCaGCGGGCCaGUgGCAG-GGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 33336 | 0.68 | 0.527318 |
Target: 5'- -gCCGaCGCCCcuUgGCCGcCCCGGCu -3' miRNA: 3'- caGGCaGCGGGccAgUGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 73088 | 0.68 | 0.518067 |
Target: 5'- uGUCC-UCGCCuCGG-CACCccccgaCCCGGCc -3' miRNA: 3'- -CAGGcAGCGG-GCCaGUGGca----GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 21779 | 0.68 | 0.518067 |
Target: 5'- gGUCCGUCgaGCgCGG-CGCCGgcagCCCccgGGCg -3' miRNA: 3'- -CAGGCAG--CGgGCCaGUGGCa---GGG---CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 79920 | 0.68 | 0.50888 |
Target: 5'- uUCCGcC-CCCGGUCGCaa--CCGGCa -3' miRNA: 3'- cAGGCaGcGGGCCAGUGgcagGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 91062 | 0.68 | 0.50888 |
Target: 5'- cUCCGUCauGgCCGGagaCGCCGcCCUGGCc -3' miRNA: 3'- cAGGCAG--CgGGCCa--GUGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 78930 | 0.69 | 0.499763 |
Target: 5'- -cCCcUCGCCCGGggccCGCCGUgUCUGGUg -3' miRNA: 3'- caGGcAGCGGGCCa---GUGGCA-GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 57039 | 0.69 | 0.499763 |
Target: 5'- -gCCGg-GCCCGGg-GCCGgggccCCCGGCu -3' miRNA: 3'- caGGCagCGGGCCagUGGCa----GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 120688 | 0.69 | 0.481752 |
Target: 5'- -cCCGUCGCgCGGgcCGCUGUCCUuaGGUu -3' miRNA: 3'- caGGCAGCGgGCCa-GUGGCAGGG--CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 73338 | 0.69 | 0.481752 |
Target: 5'- aUCag-CGCCuuaCGGUCGCCGUaUCCGGCc -3' miRNA: 3'- cAGgcaGCGG---GCCAGUGGCA-GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 61596 | 0.69 | 0.481752 |
Target: 5'- -gCCGUCGUgugcaCGGcC-UCGUCCCGGCu -3' miRNA: 3'- caGGCAGCGg----GCCaGuGGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 125854 | 0.69 | 0.464061 |
Target: 5'- -cCCGgcCGCCgCGGaCGCCGUggcgcCCCGGCc -3' miRNA: 3'- caGGCa-GCGG-GCCaGUGGCA-----GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 33128 | 0.69 | 0.455344 |
Target: 5'- -cCCGgacCGCCgCGGUCGggggccccUCGUCCCGGg -3' miRNA: 3'- caGGCa--GCGG-GCCAGU--------GGCAGGGCCg -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 5343 | 0.7 | 0.446716 |
Target: 5'- -cCCGcgcuUCGUCCGcGuaUCGgCGUCCCGGCg -3' miRNA: 3'- caGGC----AGCGGGC-C--AGUgGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 98014 | 0.7 | 0.446716 |
Target: 5'- -gCCaUCGCCuCGGcCACCGUgggCCGGCg -3' miRNA: 3'- caGGcAGCGG-GCCaGUGGCAg--GGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 27074 | 0.7 | 0.444145 |
Target: 5'- -cCCGU-GCCCGGgcccuggcccgcggaGCCGgCCCGGCg -3' miRNA: 3'- caGGCAgCGGGCCag-------------UGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 67195 | 0.7 | 0.43818 |
Target: 5'- -cCCaGcCGCUCGGUCuGCCGgCCUGGCg -3' miRNA: 3'- caGG-CaGCGGGCCAG-UGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 26415 | 0.7 | 0.429737 |
Target: 5'- -cCCGgcCGCCCGGgcccacgggCGCCGUCCCaaccGCa -3' miRNA: 3'- caGGCa-GCGGGCCa--------GUGGCAGGGc---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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