miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 43090 0.76 0.191827
Target:  5'- cGUCgGUCGCauaaagcgCGGUCACCuccacgggaGUCCCGGCc -3'
miRNA:   3'- -CAGgCAGCGg-------GCCAGUGG---------CAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 76621 0.75 0.210629
Target:  5'- aUCUGaaGaCCCugcugaagguGGUCGCCGUCCCGGCg -3'
miRNA:   3'- cAGGCagC-GGG----------CCAGUGGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 4747 0.74 0.247343
Target:  5'- -gCCGggGCCCGGUCGCCGgcggCgUCGGCu -3'
miRNA:   3'- caGGCagCGGGCCAGUGGCa---G-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 121919 0.74 0.258764
Target:  5'- -aCCGUUGCCCGG--GCCGUugCCCGGg -3'
miRNA:   3'- caGGCAGCGGGCCagUGGCA--GGGCCg -5'
5946 5' -62.7 NC_001806.1 + 23091 0.74 0.258764
Target:  5'- -gCCGUgaGCCUGGUCGCCGgggCCCugGGCc -3'
miRNA:   3'- caGGCAg-CGGGCCAGUGGCa--GGG--CCG- -5'
5946 5' -62.7 NC_001806.1 + 1717 0.74 0.264634
Target:  5'- -gCCGcCGCCCGGccguccagCGCCGgcagcacggCCCGGCg -3'
miRNA:   3'- caGGCaGCGGGCCa-------GUGGCa--------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 100012 0.73 0.282893
Target:  5'- aGUCCG-CGUCCGGU--UCGUCCUGGUc -3'
miRNA:   3'- -CAGGCaGCGGGCCAguGGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 79773 0.72 0.340714
Target:  5'- -aCgGUCGcCCCGGUUACCGauuucgcgcgcccCCCGGCc -3'
miRNA:   3'- caGgCAGC-GGGCCAGUGGCa------------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 16711 0.71 0.361299
Target:  5'- --aCGUCGUCCGGggcguccucgucgaCAUCGUCCgCGGCa -3'
miRNA:   3'- cagGCAGCGGGCCa-------------GUGGCAGG-GCCG- -5'
5946 5' -62.7 NC_001806.1 + 22053 0.71 0.373444
Target:  5'- -gCCGUgGCCCGG-CGCCGggCCCccgcccccggGGCg -3'
miRNA:   3'- caGGCAgCGGGCCaGUGGCa-GGG----------CCG- -5'
5946 5' -62.7 NC_001806.1 + 4149 0.71 0.381175
Target:  5'- -gCUGUCGCCCaGGcCGCCGUacagcacccgcCCCGGg -3'
miRNA:   3'- caGGCAGCGGG-CCaGUGGCA-----------GGGCCg -5'
5946 5' -62.7 NC_001806.1 + 5825 0.71 0.381175
Target:  5'- -cCCGcgCGCCCGuUgGCCGUCCCcgGGCc -3'
miRNA:   3'- caGGCa-GCGGGCcAgUGGCAGGG--CCG- -5'
5946 5' -62.7 NC_001806.1 + 150118 0.71 0.381175
Target:  5'- -cCCGUC-CCCGGggACCaaCCCGGCg -3'
miRNA:   3'- caGGCAGcGGGCCagUGGcaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 107608 0.71 0.381175
Target:  5'- aUCCGagacCCCGGUCGaaGUCCUGGCc -3'
miRNA:   3'- cAGGCagc-GGGCCAGUggCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 81885 0.71 0.388223
Target:  5'- -aCCGUCcccccugGCCCGGaaAcCCGUUCCGGCc -3'
miRNA:   3'- caGGCAG-------CGGGCCagU-GGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 76218 0.71 0.389011
Target:  5'- aUCCGcgaUCGCCUGGaCGCCcUCCgGGCc -3'
miRNA:   3'- cAGGC---AGCGGGCCaGUGGcAGGgCCG- -5'
5946 5' -62.7 NC_001806.1 + 58047 0.71 0.392176
Target:  5'- uGUCUGUUggcucgcucccagagGCCCGGgagGCCGagcUCCCGGCu -3'
miRNA:   3'- -CAGGCAG---------------CGGGCCag-UGGC---AGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 4318 0.7 0.396953
Target:  5'- --gCGUCGCggCCGGcCACCGccgcgcgggCCCGGCg -3'
miRNA:   3'- cagGCAGCG--GGCCaGUGGCa--------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 30260 0.7 0.396953
Target:  5'- cUCCGggGCCCGGcCcCCGcgcCCCGGCc -3'
miRNA:   3'- cAGGCagCGGGCCaGuGGCa--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 84106 0.7 0.404998
Target:  5'- -cCCGUCGCgccaCGGUcCGCCaGUCCUGGg -3'
miRNA:   3'- caGGCAGCGg---GCCA-GUGG-CAGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.