miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 1227 0.67 0.603122
Target:  5'- gGUCUcacaagCGCCCcGcC-CCGUCCCGGCc -3'
miRNA:   3'- -CAGGca----GCGGGcCaGuGGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 1717 0.74 0.264634
Target:  5'- -gCCGcCGCCCGGccguccagCGCCGgcagcacggCCCGGCg -3'
miRNA:   3'- caGGCaGCGGGCCa-------GUGGCa--------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 2318 0.67 0.603122
Target:  5'- -cCCGcCGCCggccaGGUCcUCG-CCCGGCa -3'
miRNA:   3'- caGGCaGCGGg----CCAGuGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 3380 0.66 0.650327
Target:  5'- -cCCGggacggcCGCCaGGUCGCCGUCgaagcccUCGGCc -3'
miRNA:   3'- caGGCa------GCGGgCCAGUGGCAG-------GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 4149 0.71 0.381175
Target:  5'- -gCUGUCGCCCaGGcCGCCGUacagcacccgcCCCGGg -3'
miRNA:   3'- caGGCAGCGGG-CCaGUGGCA-----------GGGCCg -5'
5946 5' -62.7 NC_001806.1 + 4318 0.7 0.396953
Target:  5'- --gCGUCGCggCCGGcCACCGccgcgcgggCCCGGCg -3'
miRNA:   3'- cagGCAGCG--GGCCaGUGGCa--------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 4747 0.74 0.247343
Target:  5'- -gCCGggGCCCGGUCGCCGgcggCgUCGGCu -3'
miRNA:   3'- caGGCagCGGGCCAGUGGCa---G-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 5343 0.7 0.446716
Target:  5'- -cCCGcgcuUCGUCCGcGuaUCGgCGUCCCGGCg -3'
miRNA:   3'- caGGC----AGCGGGC-C--AGUgGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 5825 0.71 0.381175
Target:  5'- -cCCGcgCGCCCGuUgGCCGUCCCcgGGCc -3'
miRNA:   3'- caGGCa-GCGGGCcAgUGGCAGGG--CCG- -5'
5946 5' -62.7 NC_001806.1 + 9296 0.67 0.574398
Target:  5'- cGUCCaccUCGCCggCGGUCGCCcagUUCGGCg -3'
miRNA:   3'- -CAGGc--AGCGG--GCCAGUGGca-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 16711 0.71 0.361299
Target:  5'- --aCGUCGUCCGGggcguccucgucgaCAUCGUCCgCGGCa -3'
miRNA:   3'- cagGCAGCGGGCCa-------------GUGGCAGG-GCCG- -5'
5946 5' -62.7 NC_001806.1 + 20090 0.67 0.574398
Target:  5'- -cCCGUCGUucguggCCGG-CGCCGUCUgcgGGCg -3'
miRNA:   3'- caGGCAGCG------GGCCaGUGGCAGGg--CCG- -5'
5946 5' -62.7 NC_001806.1 + 20165 0.67 0.564888
Target:  5'- -cCCGcCGCCCGGgccCGCC--CCCGGg -3'
miRNA:   3'- caGGCaGCGGGCCa--GUGGcaGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 20369 0.66 0.67051
Target:  5'- -cCCGcCGUCCcguuGGUC-CCGgcgUCCGGCg -3'
miRNA:   3'- caGGCaGCGGG----CCAGuGGCa--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 21779 0.68 0.518067
Target:  5'- gGUCCGUCgaGCgCGG-CGCCGgcagCCCccgGGCg -3'
miRNA:   3'- -CAGGCAG--CGgGCCaGUGGCa---GGG---CCG- -5'
5946 5' -62.7 NC_001806.1 + 22053 0.71 0.373444
Target:  5'- -gCCGUgGCCCGG-CGCCGggCCCccgcccccggGGCg -3'
miRNA:   3'- caGGCAgCGGGCCaGUGGCa-GGG----------CCG- -5'
5946 5' -62.7 NC_001806.1 + 22876 0.66 0.641657
Target:  5'- -gCCGUC-CCgGGgcugGCCGgggCCCGGCc -3'
miRNA:   3'- caGGCAGcGGgCCag--UGGCa--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 23091 0.74 0.258764
Target:  5'- -gCCGUgaGCCUGGUCGCCGgggCCCugGGCc -3'
miRNA:   3'- caGGCAg-CGGGCCAGUGGCa--GGG--CCG- -5'
5946 5' -62.7 NC_001806.1 + 23267 0.68 0.553533
Target:  5'- cUCCGccgCGCCgCGGgaggggcgcaagCGCaagaGUCCCGGCc -3'
miRNA:   3'- cAGGCa--GCGG-GCCa-----------GUGg---CAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 24814 0.67 0.583943
Target:  5'- -gCCGgcgcCGCCCGGgauUCGCUGggcCUCGGCc -3'
miRNA:   3'- caGGCa---GCGGGCC---AGUGGCa--GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.