miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5948 5' -58 NC_001806.1 + 135118 0.66 0.85047
Target:  5'- gGGGGCagCGCUGCGuGCUGGAcguCCGCGa -3'
miRNA:   3'- -CCCUGggGCGAUGU-UGGCCU---GGUGUa -5'
5948 5' -58 NC_001806.1 + 71349 0.66 0.85047
Target:  5'- uGGGcacgGCCCaCGC--CAGgCGGACCGCGa -3'
miRNA:   3'- -CCC----UGGG-GCGauGUUgGCCUGGUGUa -5'
5948 5' -58 NC_001806.1 + 4722 0.66 0.85047
Target:  5'- cGGGGCcuCCCGUUcGCGGCCccGGGCCGgGg -3'
miRNA:   3'- -CCCUG--GGGCGA-UGUUGG--CCUGGUgUa -5'
5948 5' -58 NC_001806.1 + 106370 0.66 0.85047
Target:  5'- uGGGGCCCgGCgGCAcccgacgacggaGCUGGACauCACGc -3'
miRNA:   3'- -CCCUGGGgCGaUGU------------UGGCCUG--GUGUa -5'
5948 5' -58 NC_001806.1 + 99651 0.66 0.85047
Target:  5'- cGGGCCUgGCgggcagGCAGCUGGGgCAUAc -3'
miRNA:   3'- cCCUGGGgCGa-----UGUUGGCCUgGUGUa -5'
5948 5' -58 NC_001806.1 + 102671 0.66 0.85047
Target:  5'- -uGGCCCacaUACAGCCGG-CCGCAc -3'
miRNA:   3'- ccCUGGGgcgAUGUUGGCCuGGUGUa -5'
5948 5' -58 NC_001806.1 + 151698 0.66 0.848122
Target:  5'- gGGGGCCCgGgCUGCccGCCgccaccgcuuuaaaGGGCCGCGc -3'
miRNA:   3'- -CCCUGGGgC-GAUGu-UGG--------------CCUGGUGUa -5'
5948 5' -58 NC_001806.1 + 30741 0.66 0.842579
Target:  5'- gGGGGCCgCCuCUuccGCcGCCgGGGCCGCGUc -3'
miRNA:   3'- -CCCUGG-GGcGA---UGuUGG-CCUGGUGUA- -5'
5948 5' -58 NC_001806.1 + 90995 0.66 0.842579
Target:  5'- -aGACCCCGCgggGCGGgCGcGACgGCGg -3'
miRNA:   3'- ccCUGGGGCGa--UGUUgGC-CUGgUGUa -5'
5948 5' -58 NC_001806.1 + 2731 0.66 0.842579
Target:  5'- cGGGGCCCUcgGCgggccggcGCGACaCGG-CCACGg -3'
miRNA:   3'- -CCCUGGGG--CGa-------UGUUG-GCCuGGUGUa -5'
5948 5' -58 NC_001806.1 + 10612 0.66 0.842579
Target:  5'- cGGACCCCGUgaauaaccagACu-CCGGuuaACCACGg -3'
miRNA:   3'- cCCUGGGGCGa---------UGuuGGCC---UGGUGUa -5'
5948 5' -58 NC_001806.1 + 92871 0.66 0.841779
Target:  5'- cGGGGUCCCGCcguccccccagcgUGCAgGCUGcGGCCGCGUg -3'
miRNA:   3'- -CCCUGGGGCG-------------AUGU-UGGC-CUGGUGUA- -5'
5948 5' -58 NC_001806.1 + 46213 0.66 0.834502
Target:  5'- aGGcCCCCGCggccccgGCGGCgGaGACCACc- -3'
miRNA:   3'- cCCuGGGGCGa------UGUUGgC-CUGGUGua -5'
5948 5' -58 NC_001806.1 + 93342 0.66 0.834502
Target:  5'- uGGGGCCCCGCacccaGCAGCUGcaGAUCGa-- -3'
miRNA:   3'- -CCCUGGGGCGa----UGUUGGC--CUGGUgua -5'
5948 5' -58 NC_001806.1 + 129412 0.66 0.834502
Target:  5'- uGGGccagcucuauucGCCaacgaUGCaGCAACUGGGCCGCGUg -3'
miRNA:   3'- -CCC------------UGGg----GCGaUGUUGGCCUGGUGUA- -5'
5948 5' -58 NC_001806.1 + 151530 0.66 0.834502
Target:  5'- uGGGACggcgCCCGUgggcccggGCGGCCGGgggcggcggggGCCGCGa -3'
miRNA:   3'- -CCCUG----GGGCGa-------UGUUGGCC-----------UGGUGUa -5'
5948 5' -58 NC_001806.1 + 64847 0.66 0.834502
Target:  5'- cGGGGguccgaaagcccCUCCGC-GCGucCCGGGCCACGg -3'
miRNA:   3'- -CCCU------------GGGGCGaUGUu-GGCCUGGUGUa -5'
5948 5' -58 NC_001806.1 + 86172 0.66 0.834502
Target:  5'- cGGGACCUgCGC-GCGG-CGGGCCAUg- -3'
miRNA:   3'- -CCCUGGG-GCGaUGUUgGCCUGGUGua -5'
5948 5' -58 NC_001806.1 + 95335 0.66 0.834502
Target:  5'- cGGGCCCCGacgACGACgGGgACCGu-- -3'
miRNA:   3'- cCCUGGGGCga-UGUUGgCC-UGGUgua -5'
5948 5' -58 NC_001806.1 + 22438 0.66 0.834502
Target:  5'- uGGGGCCUgGCgcacgcgGCGGCCGccguGGCCAUg- -3'
miRNA:   3'- -CCCUGGGgCGa------UGUUGGC----CUGGUGua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.