miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 23503 0.7 0.39243
Target:  5'- -uGGCCGUGUCgCG-CCGGCccgccgaGGGCCc- -3'
miRNA:   3'- guCCGGCAUAG-GCaGGCCG-------CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 23956 0.72 0.291877
Target:  5'- gGGGCCGccggagugGUCCGccgagCgCGGCGGGCUGUc -3'
miRNA:   3'- gUCCGGCa-------UAGGCa----G-GCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 24511 0.72 0.285476
Target:  5'- cCGGGCCGUG-CUG-CCGGCGcuggacGGCCGg -3'
miRNA:   3'- -GUCCGGCAUaGGCaGGCCGC------CCGGCa -5'
5949 5' -63.1 NC_001806.1 + 24848 0.67 0.514807
Target:  5'- aCGGGCCGcagcggcaCCGUgCUGGCggcggcggGGGCCGUg -3'
miRNA:   3'- -GUCCGGCaua-----GGCA-GGCCG--------CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 29446 0.72 0.291877
Target:  5'- gAGGCCGaggaggCCGUCagGGCGGGCaCGg -3'
miRNA:   3'- gUCCGGCaua---GGCAGg-CCGCCCG-GCa -5'
5949 5' -63.1 NC_001806.1 + 30763 0.67 0.575329
Target:  5'- gGGGCCGcGUCCuccUCCgcuuccgccuccucgGGCgGGGCCGUc -3'
miRNA:   3'- gUCCGGCaUAGGc--AGG---------------CCG-CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 31103 0.67 0.524111
Target:  5'- gCGGGCCGcgGUCC--CCGGCuGGaGCCGc -3'
miRNA:   3'- -GUCCGGCa-UAGGcaGGCCG-CC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 32961 0.72 0.273007
Target:  5'- cCGGGCCGgggccccuuggGUCCG-CCGGggcccCGGGCCGg -3'
miRNA:   3'- -GUCCGGCa----------UAGGCaGGCC-----GCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 33054 0.69 0.443131
Target:  5'- cCGGGCCGggaacCCGgaaaagccUCCGGgGGGCCu- -3'
miRNA:   3'- -GUCCGGCaua--GGC--------AGGCCgCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 33787 0.67 0.52785
Target:  5'- --cGCCGUGUUCGgucucgguagccggCCGGCGGGUgGa -3'
miRNA:   3'- gucCGGCAUAGGCa-------------GGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 34411 0.75 0.18411
Target:  5'- cCGGGCCGgg-CCGggCCGGgcCGGGCCGg -3'
miRNA:   3'- -GUCCGGCauaGGCa-GGCC--GCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 42638 0.67 0.571488
Target:  5'- -cGGCgGcGUCgCGUCCGGUgcggGGGCUGg -3'
miRNA:   3'- guCCGgCaUAG-GCAGGCCG----CCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 43278 0.67 0.514807
Target:  5'- -cGGCCGU-UCCGcCCucggaGGCGGaGCCGc -3'
miRNA:   3'- guCCGGCAuAGGCaGG-----CCGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 45225 0.71 0.310395
Target:  5'- uGGGCCcccccagaaggGUCUGUCgGGCGGGCCu- -3'
miRNA:   3'- gUCCGGca---------UAGGCAGgCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 46092 0.68 0.505571
Target:  5'- gGGGCgGU-UuuGUCCGGCccgGGGCCu- -3'
miRNA:   3'- gUCCGgCAuAggCAGGCCG---CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 49501 0.66 0.610113
Target:  5'- gCGGGUCGgcgGUUCG-CgGGUGGcGCCGUc -3'
miRNA:   3'- -GUCCGGCa--UAGGCaGgCCGCC-CGGCA- -5'
5949 5' -63.1 NC_001806.1 + 54651 0.67 0.567654
Target:  5'- uGGGCCGUAacggccgacuuagCCG-CCGGUgagGGGUCGUc -3'
miRNA:   3'- gUCCGGCAUa------------GGCaGGCCG---CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 56710 0.66 0.629538
Target:  5'- cCGGGUCGcucuggGUCC-UCCGGgGGGCgGc -3'
miRNA:   3'- -GUCCGGCa-----UAGGcAGGCCgCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 57128 0.7 0.401292
Target:  5'- cCAGGCguaUAUCCG-CgCGGUGGGCCGc -3'
miRNA:   3'- -GUCCGgc-AUAGGCaG-GCCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 64557 0.75 0.18411
Target:  5'- aGGGCaUGUAUgCGUUCGGCGGGaCCGg -3'
miRNA:   3'- gUCCG-GCAUAgGCAGGCCGCCC-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.