miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 1463 0.67 0.518521
Target:  5'- cCGGGCCGUcgUCGUCgccgcgcagcaccagCGGgGGGgCGUc -3'
miRNA:   3'- -GUCCGGCAuaGGCAG---------------GCCgCCCgGCA- -5'
5949 5' -63.1 NC_001806.1 + 2221 0.74 0.207221
Target:  5'- -cGGCCGUGUCCGgcccgcacagCCGGUuggccaGGGCCGc -3'
miRNA:   3'- guCCGGCAUAGGCa---------GGCCG------CCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 2726 0.69 0.426097
Target:  5'- gGGGUCGgggCCc-UCGGCGGGCCGg -3'
miRNA:   3'- gUCCGGCauaGGcaGGCCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 2926 0.72 0.29839
Target:  5'- gCGGGCCGccgccUCCGggCGGcCGGGCCGg -3'
miRNA:   3'- -GUCCGGCau---AGGCagGCC-GCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 3325 0.68 0.457908
Target:  5'- gGGGCCcgcggGUCCcUCCggccgcggggggcuGGCGGGCCGg -3'
miRNA:   3'- gUCCGGca---UAGGcAGG--------------CCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 4324 0.68 0.487319
Target:  5'- -cGGCCGgccaCCG-CCGcGCGGGCCc- -3'
miRNA:   3'- guCCGGCaua-GGCaGGC-CGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 4442 0.68 0.478309
Target:  5'- gGGGCgGcGUCCGcCCGG-GGGCUGc -3'
miRNA:   3'- gUCCGgCaUAGGCaGGCCgCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 4639 0.7 0.385274
Target:  5'- -cGGCCGUGacgacgucUCCGcggcggcugggCCGGCGGGCgCGg -3'
miRNA:   3'- guCCGGCAU--------AGGCa----------GGCCGCCCG-GCa -5'
5949 5' -63.1 NC_001806.1 + 4743 0.72 0.285476
Target:  5'- cCGGGCCGgggcCCGgucgCCGGCGGcGUCGg -3'
miRNA:   3'- -GUCCGGCaua-GGCa---GGCCGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 4816 0.68 0.496407
Target:  5'- aAGGCgGggGUCCGgggCGGCGaGGCCGc -3'
miRNA:   3'- gUCCGgCa-UAGGCag-GCCGC-CCGGCa -5'
5949 5' -63.1 NC_001806.1 + 5514 0.68 0.487319
Target:  5'- gAGGCCGccggccccCCGcccccCCGGCGGGCCc- -3'
miRNA:   3'- gUCCGGCaua-----GGCa----GGCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 10592 0.67 0.542904
Target:  5'- aCAGGCCGcUGUCCGUCUcuCGGaccCCGUg -3'
miRNA:   3'- -GUCCGGC-AUAGGCAGGccGCCc--GGCA- -5'
5949 5' -63.1 NC_001806.1 + 15703 0.67 0.561915
Target:  5'- cCAGGCCG-GUCgGguguaCGGCGGGCg-- -3'
miRNA:   3'- -GUCCGGCaUAGgCag---GCCGCCCGgca -5'
5949 5' -63.1 NC_001806.1 + 17459 0.66 0.582064
Target:  5'- -cGGUCGUcGUUCGUCCGGCcaaccuucgacgguuGGCCGa -3'
miRNA:   3'- guCCGGCA-UAGGCAGGCCGc--------------CCGGCa -5'
5949 5' -63.1 NC_001806.1 + 20362 0.73 0.261569
Target:  5'- uGGGCCGcccgccgucccguugGUCCcggcGUCCGGCGGGCgGg -3'
miRNA:   3'- gUCCGGCa--------------UAGG----CAGGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 20626 0.66 0.619821
Target:  5'- gGGGCCGgggGUUCGaCCaaCGGGCCGc -3'
miRNA:   3'- gUCCGGCa--UAGGCaGGccGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 20687 0.68 0.505571
Target:  5'- gGGGUCGUGcauaauggaauUCCGUUCggGGUGGGCCc- -3'
miRNA:   3'- gUCCGGCAU-----------AGGCAGG--CCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 21763 0.72 0.279186
Target:  5'- gCGGGCCGUcgggcgggGUCCGUCgaGcGCGGcGCCGg -3'
miRNA:   3'- -GUCCGGCA--------UAGGCAGg-C-CGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 21950 0.68 0.478309
Target:  5'- aCGGGCCcuucacggCCGggcagccCCGGCGGGUCGa -3'
miRNA:   3'- -GUCCGGcaua----GGCa------GGCCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 22421 0.66 0.619821
Target:  5'- -cGGCCGg--CCGcUUCGGCugGGGCCu- -3'
miRNA:   3'- guCCGGCauaGGC-AGGCCG--CCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.