miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 34411 0.75 0.18411
Target:  5'- cCGGGCCGgg-CCGggCCGGgcCGGGCCGg -3'
miRNA:   3'- -GUCCGGCauaGGCa-GGCC--GCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 64557 0.75 0.18411
Target:  5'- aGGGCaUGUAUgCGUUCGGCGGGaCCGg -3'
miRNA:   3'- gUCCG-GCAUAgGCAGGCCGCCC-GGCa -5'
5949 5' -63.1 NC_001806.1 + 124497 0.75 0.197689
Target:  5'- -cGGUCGgacgCCGucucgcUCCGGCGGGCCGUc -3'
miRNA:   3'- guCCGGCaua-GGC------AGGCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 2221 0.74 0.207221
Target:  5'- -cGGCCGUGUCCGgcccgcacagCCGGUuggccaGGGCCGc -3'
miRNA:   3'- guCCGGCAUAGGCa---------GGCCG------CCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 147669 0.74 0.222261
Target:  5'- -cGGCCGgcUCCGccCCGG-GGGCCGg -3'
miRNA:   3'- guCCGGCauAGGCa-GGCCgCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 143622 0.73 0.24042
Target:  5'- gGGGCCGUuaucuccagcgccCCGUCCGGCGcGCCGc -3'
miRNA:   3'- gUCCGGCAua-----------GGCAGGCCGCcCGGCa -5'
5949 5' -63.1 NC_001806.1 + 82004 0.73 0.260388
Target:  5'- aCAGGauCCGUcucGUCCGUCCGGCaucuucgGGGCCc- -3'
miRNA:   3'- -GUCC--GGCA---UAGGCAGGCCG-------CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 20362 0.73 0.261569
Target:  5'- uGGGCCGcccgccgucccguugGUCCcggcGUCCGGCGGGCgGg -3'
miRNA:   3'- gUCCGGCa--------------UAGG----CAGGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 32961 0.72 0.273007
Target:  5'- cCGGGCCGgggccccuuggGUCCG-CCGGggcccCGGGCCGg -3'
miRNA:   3'- -GUCCGGCa----------UAGGCaGGCC-----GCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 21763 0.72 0.279186
Target:  5'- gCGGGCCGUcgggcgggGUCCGUCgaGcGCGGcGCCGg -3'
miRNA:   3'- -GUCCGGCA--------UAGGCAGg-C-CGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 4743 0.72 0.285476
Target:  5'- cCGGGCCGgggcCCGgucgCCGGCGGcGUCGg -3'
miRNA:   3'- -GUCCGGCaua-GGCa---GGCCGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 24511 0.72 0.285476
Target:  5'- cCGGGCCGUG-CUG-CCGGCGcuggacGGCCGg -3'
miRNA:   3'- -GUCCGGCAUaGGCaGGCCGC------CCGGCa -5'
5949 5' -63.1 NC_001806.1 + 23956 0.72 0.291877
Target:  5'- gGGGCCGccggagugGUCCGccgagCgCGGCGGGCUGUc -3'
miRNA:   3'- gUCCGGCa-------UAGGCa----G-GCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 29446 0.72 0.291877
Target:  5'- gAGGCCGaggaggCCGUCagGGCGGGCaCGg -3'
miRNA:   3'- gUCCGGCaua---GGCAGg-CCGCCCG-GCa -5'
5949 5' -63.1 NC_001806.1 + 2926 0.72 0.29839
Target:  5'- gCGGGCCGccgccUCCGggCGGcCGGGCCGg -3'
miRNA:   3'- -GUCCGGCau---AGGCagGCC-GCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 45225 0.71 0.310395
Target:  5'- uGGGCCcccccagaaggGUCUGUCgGGCGGGCCu- -3'
miRNA:   3'- gUCCGGca---------UAGGCAGgCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 74883 0.71 0.318602
Target:  5'- gCGGGCC---UCCcugCCGGCGGGCUGg -3'
miRNA:   3'- -GUCCGGcauAGGca-GGCCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 150866 0.7 0.377426
Target:  5'- cCGGGCCGgcUCCG-CgGGCcaGGGCCc- -3'
miRNA:   3'- -GUCCGGCauAGGCaGgCCG--CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 4639 0.7 0.385274
Target:  5'- -cGGCCGUGacgacgucUCCGcggcggcugggCCGGCGGGCgCGg -3'
miRNA:   3'- guCCGGCAU--------AGGCa----------GGCCGCCCG-GCa -5'
5949 5' -63.1 NC_001806.1 + 23503 0.7 0.39243
Target:  5'- -uGGCCGUGUCgCG-CCGGCccgccgaGGGCCc- -3'
miRNA:   3'- guCCGGCAUAG-GCaGGCCG-------CCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.