miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5950 3' -64.4 NC_001806.1 + 83067 0.65 0.536656
Target:  5'- -gUCCCCCGgcagcagcuggaagGCGGGGGCguucGaGCGCGc- -3'
miRNA:   3'- ugGGGGGGU--------------UGCCCCCGa---C-CGCGUug -5'
5950 3' -64.4 NC_001806.1 + 149301 0.65 0.536656
Target:  5'- cACCCCCCUAgaugcgugugaguaAgGGGGGCcuGCGUAu- -3'
miRNA:   3'- -UGGGGGGGU--------------UgCCCCCGacCGCGUug -5'
5950 3' -64.4 NC_001806.1 + 21301 0.66 0.530048
Target:  5'- gGCCCCCgCGGCGGGcaccgacGCcGGCGagGACg -3'
miRNA:   3'- -UGGGGGgGUUGCCCc------CGaCCGCg-UUG- -5'
5950 3' -64.4 NC_001806.1 + 136948 0.66 0.530048
Target:  5'- gUCCCCCCGcgcacgcguaGUGGGGGCccgcgagcgUGGUGCGGu -3'
miRNA:   3'- uGGGGGGGU----------UGCCCCCG---------ACCGCGUUg -5'
5950 3' -64.4 NC_001806.1 + 2823 0.66 0.520659
Target:  5'- gGCUCgggCCCCGggggcguggAgGGGGGCgcgGGCGCGGg -3'
miRNA:   3'- -UGGG---GGGGU---------UgCCCCCGa--CCGCGUUg -5'
5950 3' -64.4 NC_001806.1 + 5948 0.66 0.520659
Target:  5'- nCCgCCCCAA-GGGGGC-GGgGCcGCc -3'
miRNA:   3'- uGGgGGGGUUgCCCCCGaCCgCGuUG- -5'
5950 3' -64.4 NC_001806.1 + 22070 0.66 0.520659
Target:  5'- gGCCCCCgCCccc-GGGGCgGGUGCuguACg -3'
miRNA:   3'- -UGGGGG-GGuugcCCCCGaCCGCGu--UG- -5'
5950 3' -64.4 NC_001806.1 + 57658 0.66 0.520659
Target:  5'- gGCCCCCCCGGaaGGcGGagaaGGCGCcggGGCu -3'
miRNA:   3'- -UGGGGGGGUUgcCC-CCga--CCGCG---UUG- -5'
5950 3' -64.4 NC_001806.1 + 15954 0.66 0.520659
Target:  5'- gAUCCCCggCCAGgacuCGGGGGCguUGGUGuCGAUg -3'
miRNA:   3'- -UGGGGG--GGUU----GCCCCCG--ACCGC-GUUG- -5'
5950 3' -64.4 NC_001806.1 + 100796 0.66 0.520659
Target:  5'- cGCCCCUcgcgagacgCCGGCGacaGGuGGCgaaagGGCGCGAUg -3'
miRNA:   3'- -UGGGGG---------GGUUGC---CC-CCGa----CCGCGUUG- -5'
5950 3' -64.4 NC_001806.1 + 5635 0.66 0.511336
Target:  5'- gGCCCCgCCCAuccGCGccaucugccauGGGCggGGCGCGAg -3'
miRNA:   3'- -UGGGG-GGGU---UGCc----------CCCGa-CCGCGUUg -5'
5950 3' -64.4 NC_001806.1 + 65457 0.66 0.511336
Target:  5'- uGCCgcggCCCCCGGguccUGGGGGCgcccGCGCAccACg -3'
miRNA:   3'- -UGG----GGGGGUU----GCCCCCGac--CGCGU--UG- -5'
5950 3' -64.4 NC_001806.1 + 29811 0.66 0.502083
Target:  5'- cGCCCCCCgUGACGggcGGGGCgucucaCGCAGCc -3'
miRNA:   3'- -UGGGGGG-GUUGC---CCCCGacc---GCGUUG- -5'
5950 3' -64.4 NC_001806.1 + 103685 0.66 0.502083
Target:  5'- cACCCCCCCGcccuccguggagGUGGGGGuUUGGU-CGGCg -3'
miRNA:   3'- -UGGGGGGGU------------UGCCCCC-GACCGcGUUG- -5'
5950 3' -64.4 NC_001806.1 + 113307 0.66 0.501162
Target:  5'- gUUCCCCCGGCcggcccGGGGGagauccaggccacCUGGCGCGu- -3'
miRNA:   3'- uGGGGGGGUUG------CCCCC-------------GACCGCGUug -5'
5950 3' -64.4 NC_001806.1 + 96722 0.66 0.492904
Target:  5'- -aCCCCCC-ACGGGcGCcacggUGGUGCAGu -3'
miRNA:   3'- ugGGGGGGuUGCCCcCG-----ACCGCGUUg -5'
5950 3' -64.4 NC_001806.1 + 48370 0.66 0.484709
Target:  5'- gGCCCCCCCGACcgaugucagccuGGGGGaCgagcuccacuuagacGGCGagGACg -3'
miRNA:   3'- -UGGGGGGGUUG------------CCCCC-Ga--------------CCGCg-UUG- -5'
5950 3' -64.4 NC_001806.1 + 78536 0.66 0.483803
Target:  5'- -gCCCCUCGG-GGGGGCgcgaGGCGUcACc -3'
miRNA:   3'- ugGGGGGGUUgCCCCCGa---CCGCGuUG- -5'
5950 3' -64.4 NC_001806.1 + 65696 0.66 0.483803
Target:  5'- -gUCCCCCAACcGGGGCccGCGCuuCg -3'
miRNA:   3'- ugGGGGGGUUGcCCCCGacCGCGuuG- -5'
5950 3' -64.4 NC_001806.1 + 4126 0.66 0.483803
Target:  5'- gGCgCCCCCCAGaggccCGGGcGGCUGuCGCc-- -3'
miRNA:   3'- -UG-GGGGGGUU-----GCCC-CCGACcGCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.